Gene Information

Name : znuC (ATP_00005)
Accession : YP_002004047.1
Strain : Candidatus Phytoplasma mali AT
Genome accession: NC_011047
Putative virulence/resistance : Virulence
Product : ABC-type Mn/Zn transport system, ATPase component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 4588 - 5334 bp
Length : 747 bp
Strand : -
Note : paralog group: ATP_00005, ATP_00493

DNA sequence : 
ATGAAACAAAATTTCATTGATATTAAAGATTTAACTGTTGCTTATGAATCAAAACCAGTTTTATGGGATATTGATTTAGA
AGTACCACAAGGTGTTTTAATGGCTATTATAGGGCCAAATGGTGCTGGAAAATCAACTTTATTGAAAACTATGTTAAATA
TAATTCCTAAAATATCGGGAAAGATATTATTCAACGGTCAATCTTATAAACAAGTTTATAAAAAAATTTCTTATGTTCCA
CAAAGAAATTCGGTAGATTGGAATTTTCCCACAACTGTCTTAGATGTTGTTTTAATGGGGCGTTATGGCCATTTAGGGTG
GTTCCAAAGACCTGGTAAAAAAGATAAAGCCATTGCTTTAGATTGTCTGGAAAAAGTTTCAATGACTACTTTAAAAGATC
GTCAAATATCTGAACTTTCAGGTGGTCAACAGCAAAGAATATTTTTAGCTCGAGCTTTAGCACAAGAAGGTGATATTTAT
TTAATGGATGAACCTTTTCAAGGTGTAGATATTAAAACAGAAAAATCTATTATTGAAGTTTTAAAGTCTCTTCAAAAACA
AGGGAAAACATTAATTGTAGTTCATCATGATTTAGATACAGTCCCTGTTTATTTTGATCATGTAACTTTAATTAATTTAC
AAAAAATAGCTAGTGGAACTATTGCTGAAAATTTTAACGAAGAAAATATTAAAAAAACTTATGCTGATAATAAATTTCAA
AGAAAAGTAACTGAAGTAGGTTTATGA

Protein sequence : 
MKQNFIDIKDLTVAYESKPVLWDIDLEVPQGVLMAIIGPNGAGKSTLLKTMLNIIPKISGKILFNGQSYKQVYKKISYVP
QRNSVDWNFPTTVLDVVLMGRYGHLGWFQRPGKKDKAIALDCLEKVSMTTLKDRQISELSGGQQQRIFLARALAQEGDIY
LMDEPFQGVDIKTEKSIIEVLKSLQKQGKTLIVVHHDLDTVPVYFDHVTLINLQKIASGTIAENFNEENIKKTYADNKFQ
RKVTEVGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-46 47
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 4e-46 47
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-49 44
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-49 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-49 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-49 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-49 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
znuC YP_002004047.1 ABC-type Mn/Zn transport system, ATPase component BAC0400 Protein 6e-69 57
znuC YP_002004047.1 ABC-type Mn/Zn transport system, ATPase component BAC0440 Protein 4e-49 44
znuC YP_002004047.1 ABC-type Mn/Zn transport system, ATPase component BAC0350 Protein 6e-50 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
znuC YP_002004047.1 ABC-type Mn/Zn transport system, ATPase component VFG0526 Protein 5e-50 43