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Name : lysS (NGK_1717) Accession : YP_002002342.1 Strain : Neisseria gonorrhoeae NCCP11945 Genome accession: NC_011035 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1427121 - 1428632 bp Length : 1512 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAGCGAACAAAACCATCCGCAAACCGAGCCGCAGTTGGACGAAAACCAAATCATCGCCCTGCGCCGCGAAAAACTGAA CAACATCCGCCAACAGCGCAACGCTTACCCCAACGATTTCAAGCGCGACAGCTTTGCCGCCGATTTGCAGGCGCAATACG GCGAAATCGGCAAAGAAGAACTCGACCCGCAGGCCGTTCCCGTTAAAATTGCCGGCCGCATGATGCTCAAACGTCAAATG GGCAAAGCCAGCTTCGCCACCATTCAAGACGTTACCGGTCAAATCCAGCTTTATCTGAACAACAAAGGCGTGAGTCAGGA AGTTTTGGACGGCTTCAACCACTGGGACTTGGGCGACATCGTCGGCGCGGAAGGCACTTTGTTCAAAACCAACCACGGCG AACTAACCGTGCGTGTGTCCGACATCCGCCTGCTGTCCAAATCCCTGCGTCCGCTGCCCGACAAACACAAAGGCTTGAGC GATCAGGAAACCAAATACCGCCAACGCTACGTCGATTTGATTGCCAATGAAGAATCGCGCAATACCTTTATCAAACGCAG CCAAATCATCCAATCTGTGCGTAATTTTATGGTGGGCGAGCATTATCTCGAAGTCGAAACCCCGATGATGCACCCGATTC CCGGCGGCGCGACAGCGAAACCCTTCGTTACCCACCACAATGCCTTGGACATTCCGCTCTACCTGCGCATCGCGCCCGAG CTGTATCTGAAACGCTTGGTGGTCGGCGGCTTGGAACGCGTGTTTGAAATCAACCGCAGCTTCCGTAACGAGGGCATGTC CGTGCGCCACAACCCCGAATTTACGATGATTGAATTTTACGAAGCCTTCTCCGACTACGAACGTATGATGCAGATGGCGG AAGACATCATCCGCAACGCATCGCGCACGGTAAACGGCACGGCAAACATCACTTACAACGGCAAAGAAGTCGATTTGGAA AGCCCGTTCGAACGTCTGACCATCCTCGAAGCCATCAAAAAATACAATCCGCACTACACCGACGAGCAGTTGAACGATGC GGAATGGCTGAAAAAAGAAATCGTCAAACACGGCGAAAGCCTGCCGCCGTCCCCGGGCATCGGCAGCCTGCAACTCGCCC TGTTTGAAGGTTGCGCCGAGGGCAAACTGTGGAATCCGACCTTTATTGTCGATTACCCGGTCGAAGTTTCCCCGTTGGCG CGCGCTTCGGATACGAAACAAGGTCTGACCGAACGCTTCGAGCTTTTCGTTGTCGGGCGCGAACTGGCAAACGGCTATTC CGAGTTGAACGACCCCGAAGACCAAGCCGAACGCTTCAAATCGCAAGTGGCGCAAAAAGATGCGGGCGACGACGAAGCCA TGCACTACGATGCCGACTACATCCGCGCGATGGAATTCGGTTTGCCGCCGACCGGCGGTTGCGGCATCGGCATCGACCGC TTAGTGATGCTGCTGACCGATTTGCAAACCATCCGCGATGTGATTCTGTTTCCGCAGATGCGTCCCGAGTAA Protein sequence : MSEQNHPQTEPQLDENQIIALRREKLNNIRQQRNAYPNDFKRDSFAADLQAQYGEIGKEELDPQAVPVKIAGRMMLKRQM GKASFATIQDVTGQIQLYLNNKGVSQEVLDGFNHWDLGDIVGAEGTLFKTNHGELTVRVSDIRLLSKSLRPLPDKHKGLS DQETKYRQRYVDLIANEESRNTFIKRSQIIQSVRNFMVGEHYLEVETPMMHPIPGGATAKPFVTHHNALDIPLYLRIAPE LYLKRLVVGGLERVFEINRSFRNEGMSVRHNPEFTMIEFYEAFSDYERMMQMAEDIIRNASRTVNGTANITYNGKEVDLE SPFERLTILEAIKKYNPHYTDEQLNDAEWLKKEIVKHGESLPPSPGIGSLQLALFEGCAEGKLWNPTFIVDYPVEVSPLA RASDTKQGLTERFELFVVGRELANGYSELNDPEDQAERFKSQVAQKDAGDDEAMHYDADYIRAMEFGLPPTGGCGIGIDR LVMLLTDLQTIRDVILFPQMRPE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-124 | 52 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-85 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002002342.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-124 | 52 |
