Gene Information

Name : Ctha_2416 (Ctha_2416)
Accession : YP_001997312.1
Strain : Chloroherpeton thalassium ATCC 35110
Genome accession: NC_011026
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2898413 - 2899084 bp
Length : 672 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB4866 lipoprotein releasing system ATP-binding protein LolD

DNA sequence : 
ATGTCCATTTTAATTTCAAATCTTACAAAGCACTACACCAAGAATCAGGCTGAAAATCCCACGCTCAGCATCTCAAATTT
AGCCATTGAAGATGGCGATGCGGTTGCGATTGTTGGGAAATCAGGTTCTGGAAAATCTACGCTTTTGAACTTAATCGCGG
GAATTGTCACGCCCGAAAGCGGCCAAATTGTTGTGAAGGGAACGGATATCACCCGGCTTTCGGAGTCCAAGCGCGATTTA
TTTCGAGCGGAAAATATTGGCTATGTGTTTCAGACGTTCAATTTGATTCAAGGGCTGAGTGCGTTGGAAAATGTGTTGCT
CGCCATGAATTTTTGCGGAAAAGTCAAGCAGCCGGAAGCGCGAGCCAAAATATTGCTTGAGCGCGTCGGTTTGGGCGAAA
AGCTGCATAAAAAGCCGTCGCAGCTTTCTGTTGGTGAGCAGCAGCGCGTTGCGCAGGCGCGCGCGATTGCCAACGAGCCG
CATATCATTCTCGCCGATGAGCCAACCGCGAATTTGGACGACAAGAATACCGAAGTCGTCATGAATTTACTCGAAGAATT
TAGTCGAGAAAATGGCCGGATTTTAATTTTGGTCACACATGAAAAAGAAGTGGCCGAGCGTTTTCCAAAGCAACTTGAAT
TGGAATCGATCAACCAAAGCGTGGGCAGATAG

Protein sequence : 
MSILISNLTKHYTKNQAENPTLSISNLAIEDGDAVAIVGKSGSGKSTLLNLIAGIVTPESGQIVVKGTDITRLSESKRDL
FRAENIGYVFQTFNLIQGLSALENVLLAMNFCGKVKQPEARAKILLERVGLGEKLHKKPSQLSVGEQQRVAQARAIANEP
HIILADEPTANLDDKNTEVVMNLLEEFSRENGRILILVTHEKEVAERFPKQLELESINQSVGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 9e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ctha_2416 YP_001997312.1 ABC transporter-like protein NC_012469.1.7686878. Protein 3e-33 44
Ctha_2416 YP_001997312.1 ABC transporter-like protein NC_012469.1.7686946. Protein 1e-27 43
Ctha_2416 YP_001997312.1 ABC transporter-like protein NC_012469.1.7685735. Protein 3e-31 41