Gene Information

Name : Ctha_2241 (Ctha_2241)
Accession : YP_001997139.1
Strain : Chloroherpeton thalassium ATCC 35110
Genome accession: NC_011026
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2681523 - 2682242 bp
Length : 720 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_3703 response regulator receiver domain protein (CheY-like)

DNA sequence : 
ATGCTACAAAAAAAGGTCTTAATCATCGAGGATGATTTTGACATCGCTAACTTGGTCAAAATCAATCTGAGCGACATTGG
CTGCGATTGCGATATTGCTGGCGATGGGCTTTCGGGAATTGAATATGCGCTGTCGAACAATTATGATGTTATCATTTTGG
ACATGATGTTGCCCAAGCTCGATGGGCTTGAAGTCTGCCAACGCCTGCGAAAAAACCACATCCTGGTTCCCATTTTGATG
CTCACCTCACGCTCGGAAGAAGACGACAAAGTCACCAGCCTAAATGCCGGCGCGGACGATTATATCACCAAGCCGTTCAG
CATTCGCGAGCTCACCGCCAGAGTTATCGCACATATTCGCAGATATCGACCGGAAAAAGAACCGAGCTTCATCAATTCAA
AAAAAACATTTCTGTTCGATGGACTTTGCTTGGACACGGAAAATCACAAGGTCACACTCGCGAGCAAGGAAATTGAAATC
ACAGCAAAGGAGTTTGATCTGCTAAGCCTTTTCATGAAAAATCCTGGGCGCACTTACTCCAGAACCGAATTGCTCGACCT
TGTTTGGGGGGCGAGTTATAGCGGATACGAACACACGGTAAATTCTCACATCAATCGCCTGCGGATGAAAATTGAGGAAA
ATCCAGCTAAACCAAAGTATATTTTAACGGTTTGGGGAGTCGGTTATAAATTTAACAATCAACTGAAGAAGTCAAGTTAG

Protein sequence : 
MLQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLEVCQRLRKNHILVPILM
LTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEI
TAKEFDLLSLFMKNPGRTYSRTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFNNQLKKSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-43 44
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-42 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator AF155139.2.orf0.gene Protein 2e-40 43
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 8e-42 43
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 1e-38 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 5e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 4e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 4e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 4e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 4e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 4e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 5e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 4e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 5e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 4e-34 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 8e-38 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 3e-33 42
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator EU250284.1.orf4.gene Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator VFG1563 Protein 2e-43 44
Ctha_2241 YP_001997139.1 winged helix family two component transcriptional regulator VFG1702 Protein 1e-42 44