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Name : Ctha_2155 (Ctha_2155) Accession : YP_001997053.1 Strain : Chloroherpeton thalassium ATCC 35110 Genome accession: NC_011026 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2568536 - 2570410 bp Length : 1875 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dsy:DSY3347 hypothe DNA sequence : ATGTCTAAATACAAAATACCTCTTTTTAAACATGCGATAGACTCAGCAATTATATTTCTTTCTACTTTTATTGCATATAC ATTAAGATTGGAGCCCATCCAAGCTGATTATTTTTTTCCAGCTTTAGTTGTCTCGATTATTACATTTCCTATAAAAACAG GGATTGGTTTTTTGTTTGGTTTATATAGACAATCCTGGCACAATGTAGGAGTTAAAGATCTATCGGCTATTATAAAATTT GCAGCTGGTTATACCTTAATCAGCTTAGTTATAAGAGCGCTCTTAAGTGAATTAATATTTTGGCCGATAAGTATCGCATT CATTGAGGCTATGATATTGATATTTGGGTTATCTCTCATAAGACTTACACGACGGGTTGTTTATTCTCAAAGAAAAAAGG CTCTTATCAAATCGAAAGATAAGGTTCAAAAAAGAGTTTTGGTTATTGGGGCGGGAGAAGCAGGTACTTTTATTGTCAGA GAAATGCAGCGTCATCCAGAGTCAGGGCTTTTACCTATTGGCTTTTTAGATGATGACGTTATTAAGCAAAAGCAGAACTT CCTTGGTCTTCCGGTTTTTGGAGCACTTTACGATTTAAAGCAGGTTGTCGACGCCGAGGATATCGACCAAGTGTTGATTG CTATTCCTTCAGTGACCGGTGATGTTATTACAAAGGTCGTTCATGATGCACAAGAAGCTTCCGTGCAATATCGGACTATT CCAGGATTTCATGAATTATTAAGTGGGCAAGCATCTATGTCTCAAATACGAGAAGTTGATGTCCAAGATCTTTTAAGGCG AAAGCCAGTACAACTTGATTTAGCGTTAATAGCTCATTACCTCAAAGACCAAATTGTCCTGGTTTCAGGTGCGGGTGGAT CCATTGGTTCTGAAATAGTTCGTCAAGTTGTGCGTTTCAATCCAAGAAAACTGATACTTGTTGGACGGGGAGAAAATAGT TTGTACTTGATTAGTGAAGAATTACAAAAGAATTTTCATGGGTTAAACTTTCTTTGTAAGGTTATCGATGTTAGGGATAG GAATAGTTTAGAACATTTATTTTCACGGGAGCAGCCGAACGTTGTGTTCCACGCAGCTGCGCATAAGCATGTTCCATTAA TGGAGTTAGCGCCAGAGCAGGCGGTATTAAATAACGTGGGTGGGACAAAAAATTTAGTTGAATTAGCCTTAAAATATAAA GTGAGCTGCTTCGTCAATATTTCCACGGATAAGGCGGTAAATCCTACATCTGTAATGGGTGCAACAAAGCGTGTGGCTGA GTATACAGTTGAGCTTGCAAGTCGGCAAGCTCAAAGTAATCAACGATTTGTTTCAGTCCGATTTGGTAATGTGTTAGGGA GTCGAGGCAGTGTTATTCCAAAGTTTAAACAACAAATTTTGTCCGGTGGTCCTGTAACTGTAACTCATCCTGAAATGGTT AGGTTCTTCATGACGATCCCTGAAGCTTCGCAGCTTGTATTGCAAGCTGGGGGGATTGGTCAAAACGGCGAAGTATATGT TCTTGATATGGGAGAACCTGTGAAAATTGTTGATATGGCGACAGAGTTGATCAAACTTTCAGGATTAGTTCCAAATAAGG ATATTCGAATTGAGTTTACGGGGATTCGTCCTGGTGAAAAGTTATATGAAGAATTGCTGACTTCGGAAGAGGGCACGAAT TCCACTCATCATGAGAAAATATATGTTGCGAAGAAAGGTTCAATGGATAGCGAAGTGTTTGAAAATTACTTGGAATCGTT ATTTTTTGCAGCATCAAGTGGTAATGGAGAAGATGTTAAACGGGTATTAAAGAAAATAATACCGACATTTTCATATACTG AAACAAAAAAAGATAATAGCCTCCAGAAAGTTTAA Protein sequence : MSKYKIPLFKHAIDSAIIFLSTFIAYTLRLEPIQADYFFPALVVSIITFPIKTGIGFLFGLYRQSWHNVGVKDLSAIIKF AAGYTLISLVIRALLSELIFWPISIAFIEAMILIFGLSLIRLTRRVVYSQRKKALIKSKDKVQKRVLVIGAGEAGTFIVR EMQRHPESGLLPIGFLDDDVIKQKQNFLGLPVFGALYDLKQVVDAEDIDQVLIAIPSVTGDVITKVVHDAQEASVQYRTI PGFHELLSGQASMSQIREVDVQDLLRRKPVQLDLALIAHYLKDQIVLVSGAGGSIGSEIVRQVVRFNPRKLILVGRGENS LYLISEELQKNFHGLNFLCKVIDVRDRNSLEHLFSREQPNVVFHAAAHKHVPLMELAPEQAVLNNVGGTKNLVELALKYK VSCFVNISTDKAVNPTSVMGATKRVAEYTVELASRQAQSNQRFVSVRFGNVLGSRGSVIPKFKQQILSGGPVTVTHPEMV RFFMTIPEASQLVLQAGGIGQNGEVYVLDMGEPVKIVDMATELIKLSGLVPNKDIRIEFTGIRPGEKLYEELLTSEEGTN STHHEKIYVAKKGSMDSEVFENYLESLFFAASSGNGEDVKRVLKKIIPTFSYTETKKDNSLQKV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-92 | 46 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-91 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ctha_2155 | YP_001997053.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 3e-92 | 44 |
