Gene Information

Name : Ctha_1768 (Ctha_1768)
Accession : YP_001996672.1
Strain : Chloroherpeton thalassium ATCC 35110
Genome accession: NC_011026
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2099111 - 2099827 bp
Length : 717 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gfo:GFO_1949 ABC-type transporter ATP-binding protein

DNA sequence : 
ATGAAAACCGTTCTGGAAGTAAGTGGCTTAACGAAGATTTATCAAAGTGGCGAGAGGCATTTGAAGGTGTTGGACGCGAT
TAATTTTTCCTTACAACAAGCCGATACATGCGCAATTGTGGGGCCATCGGGCAGTGGAAAAACCACACTGATGGGAATTT
GCGCCGGTTTAGATAAGCCGACTTCGGGCAACGTGCTTTTGAATGGAATTAATTTGGGCAGTTTAACTGAGGATGGACGC
GCCAAAGTGCGCAATGAATATGTGGGATTTGTTTTTCAAAATTTTCAACTTATTCCTACCCTAACCGCGTTAGAAAACGT
CTTAATTCCTTTGGAACTCAGGGGCGAAAAAGTTAGGCATGAAGAAGCGATCGCACTTTTGGAAAAAGTGAGCTTGAAAG
ATCGCATGAATCATTATCCTGTGCAGCTTTCGGGCGGCGAGCAGCAGCGCGTGGCTTTGGCGCGAGCGTTCATCAATCGC
CCGATGATTCTTTTCGCAGATGAACCCACGGGAAATTTGGATACTGAAACCAGCAAAGCCGTTGAAGCCTTGCTTTTTGC
ACTCAATAAAGAAGCGGGAACTACGCTCGTGCTTGTCACTCACGATATGGAACTGGCCGAGAAAACCGGTCGCATTATGA
AAATCAAGGGTGGCAAAATGGTTTTTGACAGCGCAAAAGCAGCTCAGCAAATCGGGCTCGAAAATGTGAATCACTAA

Protein sequence : 
MKTVLEVSGLTKIYQSGERHLKVLDAINFSLQQADTCAIVGPSGSGKTTLMGICAGLDKPTSGNVLLNGINLGSLTEDGR
AKVRNEYVGFVFQNFQLIPTLTALENVLIPLELRGEKVRHEEAIALLEKVSLKDRMNHYPVQLSGGEQQRVALARAFINR
PMILFADEPTGNLDTETSKAVEALLFALNKEAGTTLVLVTHDMELAEKTGRIMKIKGGKMVFDSAKAAQQIGLENVNH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-33 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ctha_1768 YP_001996672.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-39 45
Ctha_1768 YP_001996672.1 ABC transporter-like protein CP001581.1.gene798.p Protein 5e-37 42
Ctha_1768 YP_001996672.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-35 42