Gene Information

Name : Ctha_1404 (Ctha_1404)
Accession : YP_001996314.1
Strain : Chloroherpeton thalassium ATCC 35110
Genome accession: NC_011026
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1640815 - 1641561 bp
Length : 747 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VP1995 ABC transporter, ATP-binding protein

DNA sequence :
ATGCAAGCAAACACAAAAATCCCTGAAAAAAAATATCCCTTGTTAATTGAAGCCCAGAATGTCAATAAGGTTTACAATCT
TGAAGCGGCTCCAATCAAAGCGCTTCATAATGTGAGTTTTTCAATTCAAGAAGGCAGTTTTGTTTCCGTTGTAGGAAAAT
CGGGCAGTGGAAAATCTACTTTGCTCAATTTAATTGCGGGAATGGACAAACCGACTTCGGGCGAAATGGTCGCTGCTGGA
AAACTGATTTCGAAGATGACAAGCCATGAACTGGCTGCGTATCGGCGGACAGCCATCGGCATGATTTTCCAGTCGTTCAA
TTTGATCAATAGCATGACCGCGCTGCAAAATGTGGCGATGCCGCTTCTTTTTTCGGGCGAAACGGAAGCCAATCGTAATC
GACGTGCGGCGCAGCTGCTCGAAAGCGTCGGGCTGGAAAGTCGCGCAAAGCATCGCCCAACGGAGCTTTCTGGTGGTGAG
CAGCAGCGAGTGGCCATTGCCCGCGCGCTCGTCAACGATCCTTTTTTTCTACTGGCCGATGAGCCCACTGGAAATTTGGA
TTCCAAAACTTCCGAAGATATTTCCGCTTTGCTCAAACGAATTCACAGCCAAGAAGGGCGCACCGTGATTATGATTACCC
ACGATTTGCAATTGGCGCGAAAACTTTCTACGCGCGTTTTGACCTTAAAAGACGGTGAAATTATTTCCGATGAAACCGTT
GCGCAAGAAGCTTGCCTCACCAAATAA

Protein sequence :
MQANTKIPEKKYPLLIEAQNVNKVYNLEAAPIKALHNVSFSIQEGSFVSVVGKSGSGKSTLLNLIAGMDKPTSGEMVAAG
KLISKMTSHELAAYRRTAIGMIFQSFNLINSMTALQNVAMPLLFSGETEANRNRRAAQLLESVGLESRAKHRPTELSGGE
QQRVAIARALVNDPFFLLADEPTGNLDSKTSEDISALLKRIHSQEGRTVIMITHDLQLARKLSTRVLTLKDGEIISDETV
AQEACLTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-26 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-25 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-26 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-26 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ctha_1404 YP_001996314.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-32 45
Ctha_1404 YP_001996314.1 ABC transporter-like protein CP001581.1.gene598.p Protein 9e-34 44
Ctha_1404 YP_001996314.1 ABC transporter-like protein NC_012469.1.7686878. Protein 4e-34 44
Ctha_1404 YP_001996314.1 ABC transporter-like protein CP001581.1.gene798.p Protein 7e-33 43