Gene Information

Name : Ctha_1022 (Ctha_1022)
Accession : YP_001995933.1
Strain : Chloroherpeton thalassium ATCC 35110
Genome accession: NC_011026
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1210265 - 1211332 bp
Length : 1068 bp
Strand : +
Note : TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: cph:Cpha266_0257 integron integrase

DNA sequence : 
ATGAATGCTTCTCCCATATTATCTAAAAATCCAATAACCGGTTTTCAGCCTTTCAAACCGGCGCCAAAACTTTTGGATTT
ATTACGGGAAGCCTTACATGTTCGTCCTTACAGCAAACGAACTCAGAAAGCTTATTGCTATTGGGTAAAGCAGTTTGTTT
ATTTTTATCAATTACGGCATCCGAAAGATATGTCGGAACCGGAGATTAATGCTTTCCTGACACATCTGGCGGTTGAGAAA
AAAGTTAGCGCCTCGCCTCAAAACCAAGCGTTAAGCGCGTTGTTATTTCTTTATCGTCATGTGATAGGTAAAGAACTTGG
CGATCTTGGACATGTTATACGCGCTCGAAAACCCATACGTTTGCCTGTCGTTTTAACCCGAGAGGAAGTCAAGTCGGTTC
TTACCGGTCTCAAAGCTGAGAAGTGGTTGATGGCTTCGCTGATGTATGGCTCAGGATTGCGGCTCATGGAATGTTTACAA
TTGCGGATTCATGATATTGATTTTTCCCGTAATGAAATTCCGATTCGTGACGGCAAGGGCGCAAAAGACCGGCTCACGAT
GTTGCCTGAATCTTTGAAAAAACCTCTTGCCGATCATCTGAAACGGGTTAAACGCATTCACGATAAAGACCTTGCTGATG
GTTGGGGACGTGTGATATTACCCAATGCCCTGGATCGCAAATATCCGAATGCACCGGCCGAATGGCGGTGGCAGTGGGTT
TTCCCTCAAGAGAACCGCTGGAAGAATACGAACACGGGAGAAGAGGGACGGCATCACGTCCATGAATCCATTATCCAAAA
AGCCGTAACCCGTGCGGTTCGAAAGGCAGGCTTGACCAAGCGAGCTACGTGCCACACTTTTAGGCATTCTTTTGCTACTC
ATCTTCTTGAATCAGGTTATGATATTAGAACAATACAGGAATTATTAGGACATAAAAATGTGGAGACTTACAATGATTTA
TACTCATGTAATCAATCAAGGTGGGAAAGGTGTAAGAAGCCCTGCAGATTTTTAGTATATGTTGCCAATATGAGCAACAT
ATACAAGTCTATAAACAAGGAGAAATGA

Protein sequence : 
MNASPILSKNPITGFQPFKPAPKLLDLLREALHVRPYSKRTQKAYCYWVKQFVYFYQLRHPKDMSEPEINAFLTHLAVEK
KVSASPQNQALSALLFLYRHVIGKELGDLGHVIRARKPIRLPVVLTREEVKSVLTGLKAEKWLMASLMYGSGLRLMECLQ
LRIHDIDFSRNEIPIRDGKGAKDRLTMLPESLKKPLADHLKRVKRIHDKDLADGWGRVILPNALDRKYPNAPAEWRWQWV
FPQENRWKNTNTGEEGRHHVHESIIQKAVTRAVRKAGLTKRATCHTFRHSFATHLLESGYDIRTIQELLGHKNVETYNDL
YSCNQSRWERCKKPCRFLVYVANMSNIYKSINKEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int1 YP_005160012.1 integrase Not tested Not named Protein 4e-55 51
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 3e-66 49
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 3e-66 49
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 3e-66 49
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 3e-66 49
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 3e-66 49
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 2e-66 49
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 3e-66 49
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 2e-66 49
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 3e-66 49
intI YP_001844881.1 integrase Not tested AbaR20 Protein 4e-66 49
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 3e-66 49
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 4e-66 49
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 3e-66 49
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 4e-66 49
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 3e-66 49
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 4e-66 49
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 7e-66 48
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 7e-66 48
intI1 AAK02045.1 integrase Not tested SGI1 Protein 7e-66 48
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 7e-66 48
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 7e-66 48
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 7e-66 48
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 7e-66 48
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 7e-66 48
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 7e-66 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ctha_1022 YP_001995933.1 integron integrase VFG1028 Protein 4e-66 48