Gene Information

Name : Rpal_5296 (Rpal_5296)
Accession : YP_001994257.1
Strain : Rhodopseudomonas palustris TIE-1
Genome accession: NC_011004
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5714478 - 5715131 bp
Length : 654 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_0686 ABC transporter ATP-binding protein

DNA sequence : 
ATGCTGATCGTCTCCGGTCTCACCAAATCCTATGTGTCCGGTCAGGACCGCGTCGCTGTGCTGCGCGGTGTCGACCTTGC
GGTCGAGCCCGGCGAGAGCGTGGCGCTGACCGGCGAATCCGGCAGCGGCAAATCGACCTTGCTGCATCTGATCGCCGGCC
TCGATCAGCCCGATGGCGGCGCCATCACCTTCGGCGAAGCGACGATCTCGACGATGCCAGACGCCGAGCGTGCCGCCTTT
CGGCGCGAACGGCTCGGGCTGGTGTTTCAGCAGTTCAACCTGATCCCGAGCCTGACGGTTGCCGACAATCTCGTATTCCA
GTCCCGTCTCGCCGGCCGCCACGATGAGGCGTGGCGCACCGAGCTGATCGAGCGGCTCGGGCTCGGCACCTTGCTCAAGC
GCTACCCCGAGCAACTCTCTGGCGGCCAGCAGCAGCGCGTCGCAATCGGCCGCGCGCTGGCGATCAAGCCGCTGCTGCTT
CTCGCCGACGAGCCGACCGGCAATCTCGACGAATCAACCGCCGACGACGTGCTGTCGCTTGCCACCGATCTGGTTCACCG
CACCGGCTGTGGCTTCCTGATGGTGACGCACAGCGAGCGTCTCGCCGGTATGCTCGATCGCCGGGTGCATCTGCACGCGG
GGCTGATCCATTGA

Protein sequence : 
MLIVSGLTKSYVSGQDRVAVLRGVDLAVEPGESVALTGESGSGKSTLLHLIAGLDQPDGGAITFGEATISTMPDAERAAF
RRERLGLVFQQFNLIPSLTVADNLVFQSRLAGRHDEAWRTELIERLGLGTLLKRYPEQLSGGQQQRVAIGRALAIKPLLL
LADEPTGNLDESTADDVLSLATDLVHRTGCGFLMVTHSERLAGMLDRRVHLHAGLIH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-36 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-36 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-36 45
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpal_5296 YP_001994257.1 ABC transporter CP001581.1.gene798.p Protein 8e-37 43
Rpal_5296 YP_001994257.1 ABC transporter CP001581.1.gene598.p Protein 3e-35 41
Rpal_5296 YP_001994257.1 ABC transporter NC_008702.1.4606598. Protein 7e-30 41