Gene Information

Name : Rpal_0507 (Rpal_0507)
Accession : YP_001989542.1
Strain : Rhodopseudomonas palustris TIE-1
Genome accession: NC_011004
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 549316 - 550335 bp
Length : 1020 bp
Strand : +
Note : TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: nha:Nham_0488 tyrosine recombinase XerD

DNA sequence : 
ATGCGTCGACCGCGAACCACATCCAGGACTGCCGCGCTGCCCGAGCCGGAGGCTCAGGCTGCGCCGCTACGCCCGGCTTC
CTATTCGGATGCCGGGCTGACCGAGCTGTTTCTCGACATGATCGCGGCGGAGCAGGGCGCTTCCGCCAACACGCTCGATG
CCTATCGGCGCGATCTGGCGGATCTATCGCACTTTCTGTCGCGCCGCCGGCTCAGCATCGGCTCCGCCGACACCGCGGCG
CTGCGCAGTTATCTGGCGGATCTCGACAACCGCGGCTTTGCCACCTCCAGCGTGGCGCGGCGGTTGTCGGCGCTGCGGCA
TTTGTTCCGGTTTCTGCTTAGCGAGCGGATTCGCGCTGACGATCCGGCCGCGATCCTGGCCGGGCCAAAGCGCGGCCGCA
GCCTGCCGAAAGTGCTGTCGATCGCGGATGTCGACCGGCTGCTCGCCTGTGCGCGGCAGGAGATCGATGCCGCAGAAGGT
GGCGCGCGGCTGCGTGCGGCACGGCTGAACTGCCTGCTCGAAGTGCTCTACGCCACCGGGTTGCGCGTCTCGGAACTGGT
GTCGCTGCCGCTGTCGGCGGCCCGGCGCGATGCCCGGATGATCGTGGTGCGCGGCAAGGGCGACAAAGAGCGGCTGGTGC
CGCTCAACGCCGGCGCCAAACAGGCGATGGCGCGCTATCTGGAAGAGGTCGCGGTGGCCACCAAAGAAACCAAAGGCGCG
CCTGCCTCGAAATGGCTGTTCCCGTCCTTCGGCGAGAGCGGGTATCTCACCCGGCAGCATTTTGCGCGGGATCTGAAGGA
TTTGGCCGCGCGGGCCGGGCTGTCGCCGCGGCTGGTTAGCCCGCACGTGCTGCGCCATGCCTTTGCCAGCCACCTGCTGC
ACAACGGCGCCGACCTGCGGATCGTGCAGACGCTGCTCGGCCACAGCGACATCTCGACCACCCAGATCTACACCCATGTG
GTCGAGGAGCGCCTGAAGAGCCTGGTGCGCGACCTCCATCCGCTCGGCGAAGGCCGCTGA

Protein sequence : 
MRRPRTTSRTAALPEPEAQAAPLRPASYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAA
LRSYLADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDRLLACARQEIDAAEG
GARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDKERLVPLNAGAKQAMARYLEEVAVATKETKGA
PASKWLFPSFGESGYLTRQHFARDLKDLAARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV
VEERLKSLVRDLHPLGEGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 2e-36 41
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 2e-36 41