Gene Information

Name : fliP (Rpal_4413)
Accession : YP_001993384.1
Strain : Rhodopseudomonas palustris TIE-1
Genome accession: NC_011004
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 4737736 - 4738500 bp
Length : 765 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
GTGAGCGCCTCGACCGGCCCGCGTAGAGTTTTCATCAGTTCATCGGTTCTGATCATCGCGGTTCTCGCGATGATCGCGCC
TGCGCAGGCCCAAGACATCAGCATCAATCTCGGCGGCAATAGCCCCGGCGTCACCGAGCGCGCGATCCAGCTGATCGCGC
TGCTGACGGTACTGTCGATCGCGCCGTCGATCCTGGTGATGATGACATCGTTCACCCGCATCGTCGTGGTGCTATCGCTG
CTGCGCACCGCGCTCGGCACCGCCACAGCACCGCCGAACGCGGTGATCATCGCGCTGGCGCTATTCCTGACCGCGTTCGT
GATGGGACCGACGCTGCAGAAATCTTACGACGAAGGCATCAAGCCGCTGATCGCCAACGAGATCGGCGTCGACGACGCGA
TGGTGCGGGCCTCCGGACCGCTGCGGATCTTCATGCAGAAGAACGTCCGCGAGAAAGATCTCAAGCTGTTCCTCGATCTG
TCGGGCGAACCGCCGCCGGCGACGCCCGAAGATCTCTCGCTGCGCATCTTGATGCCGGCGTTCCTGATCTCGGAGCTGAA
GCGCGCCTTCGAGATCGGCTTCCTGCTGTTCCTGCCCTTCCTGATCATCGACCTGGTCGTCGCATCGATCCTGATGTCGA
TGGGCATGATGATGTTGCCACCCGTCGTGGTGTCGCTGCCGTTCAAGCTGATCTTCTTCGTGCTGGTCGACGGCTGGTCG
CTCGTCGCCGGCAGCTTGGTGCAAAGCTACACCGGCGGCGGATAG

Protein sequence :
MSASTGPRRVFISSSVLIIAVLAMIAPAQAQDISINLGGNSPGVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSL
LRTALGTATAPPNAVIIALALFLTAFVMGPTLQKSYDEGIKPLIANEIGVDDAMVRASGPLRIFMQKNVREKDLKLFLDL
SGEPPPATPEDLSLRILMPAFLISELKRAFEIGFLLFLPFLIIDLVVASILMSMGMMMLPPVVVSLPFKLIFFVLVDGWS
LVAGSLVQSYTGGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-27 47
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-26 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-26 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-26 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-26 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-26 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 6e-25 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_001993384.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-47 56
fliP YP_001993384.1 flagellar biosynthesis protein FliP VFG2494 Protein 4e-50 55
fliP YP_001993384.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-44 47
fliP YP_001993384.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-40 47
fliP YP_001993384.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-27 45
fliP YP_001993384.1 flagellar biosynthesis protein FliP VFG0519 Protein 7e-27 44
fliP YP_001993384.1 flagellar biosynthesis protein FliP VFG0394 Protein 5e-27 43
fliP YP_001993384.1 flagellar biosynthesis protein FliP VFG0188 Protein 3e-28 43