Gene Information

Name : Rpal_3504 (Rpal_3504)
Accession : YP_001992480.1
Strain : Rhodopseudomonas palustris TIE-1
Genome accession: NC_011004
Putative virulence/resistance : Resistance
Product : major facilitator superfamily protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 3752286 - 3753572 bp
Length : 1287 bp
Strand : -
Note : PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:blr4054 tetracycline resistance protein

DNA sequence :
ATGACCGAGGAAGCCGCAGCGCAGCAGACGCCGGTGCCCGGCATGACCGGGCCGCGCCGCGCCGCCGTCGGCTTCATCTT
CATCACCATCGCACTCGATATGCTCAGCCTCGGCATGATCCTGCCGATCCTGCCGAAGCTGATCGAGAGTTTCTCCGACG
ACAACACCGCTAACGCGGCGCGGATCTACGGGCTGTTCGGCACCGCCTGGGCTCTGATGCAGCTGTTCGCCTCGCCGATC
CTCGGCGGGCTGTCGGACCGGTTCGGGCGGCGCCCGGTGATCCTGCTGTCCAATCTGGGGCTCGGCCTTGACTACATCCT
GATGGCGCTGGCGCCGTCGCTGTGGTGGCTGTTTGTCGGCCGGGTGATCTCGGGCATCACTTCGGCCAGCATCTCGACCT
CGTTCGCCTATATCGCCGACGTCACACCGGCGGAAAAACGTGCGGCGGTGTTCGGCATGGTCGGCGCCGCGTTCGGACTC
GGCTTCACCTTTGGGCCGGCGATCGGCGGTCTGCTCGGCGGTGTGGATCCGCGGTTGCCGTTCTGGGTGGCTGCGGCGCT
GAGCCTGGCGAATACGTTGTACGGCCTGTTCGTATTGCCGGAGTCGCTACCGCGAGACCGACGCTCGCCGTTCCGCTGGA
AGTCCGCCAATCCGATCGGGGCGGTGCGGCTGCTGAGTTCGAACGCGCGATTGGCTGCGCTTGCGGTGGTCGAGTTCTGT
GCCGAGGTGGCGCATGTCGCGCTGCCGGCAACCTTCGTGCTCTACACCGGCTATCGCTATGCCTGGGATCAGACCACGAT
CGGTCTGGCGCTGGCGTTCGTCGGCGTCTGCACCACCATCGTGCAGGGCGGGCTGGTCGGCCCCGCGGTGAAGCTGCTCG
GCGAGCGCAACGCCCAGATCATCGGCTATGGCGGCGGTGCGCTCGGCTTCCTGATCTATGCGCTGGCGCCGAGCGGGACG
CTGTTCTGGATCGGCATTCCGGTGATGACGCTGTGGGGCATCGCCGGGCCGGCAACCTCGGGGATGATGACCCGGCTGGT
CTCGCCGTCGCAGCAGGGCCAGTTGCAGGGCGCCACCACCAGCGTCAAGAGCGTCGCCGAACTGATTGGCCCGTTCCTGT
TCACGATGATCTTCGCGTACTTCATCGATGCCGGCGCACCGCTGCAGCTGCCCGGGGCGCCGTTCCTGCTCGCCGGTGCG
CTTCTGGTCGTGTCCGTCGTGATCGTGGCCTTCGCATCGCCCGCCGCCGACAGCAAACAGGCGCCGCAAGCGGCGCCTGA
AAGCTGA

Protein sequence :
MTEEAAAQQTPVPGMTGPRRAAVGFIFITIALDMLSLGMILPILPKLIESFSDDNTANAARIYGLFGTAWALMQLFASPI
LGGLSDRFGRRPVILLSNLGLGLDYILMALAPSLWWLFVGRVISGITSASISTSFAYIADVTPAEKRAAVFGMVGAAFGL
GFTFGPAIGGLLGGVDPRLPFWVAAALSLANTLYGLFVLPESLPRDRRSPFRWKSANPIGAVRLLSSNARLAALAVVEFC
AEVAHVALPATFVLYTGYRYAWDQTTIGLALAFVGVCTTIVQGGLVGPAVKLLGERNAQIIGYGGGALGFLIYALAPSGT
LFWIGIPVMTLWGIAGPATSGMMTRLVSPSQQGQLQGATTSVKSVAELIGPFLFTMIFAYFIDAGAPLQLPGAPFLLAGA
LLVVSVVIVAFASPAADSKQAPQAAPES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 2e-34 42
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 1e-34 42
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 1e-34 42
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 1e-34 42
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 1e-34 42
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 7e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpal_3504 YP_001992480.1 major facilitator superfamily protein NC_011586.7045189.p0 Protein 1e-31 42
Rpal_3504 YP_001992480.1 major facilitator superfamily protein AF090987.gene.p01 Protein 2e-26 42
Rpal_3504 YP_001992480.1 major facilitator superfamily protein CP001485.1.gene2821. Protein 4e-35 42
Rpal_3504 YP_001992480.1 major facilitator superfamily protein AF534183.gene.p01 Protein 5e-35 42
Rpal_3504 YP_001992480.1 major facilitator superfamily protein NC_010410.6002597.p0 Protein 4e-35 42
Rpal_3504 YP_001992480.1 major facilitator superfamily protein X75761.gene.p01 Protein 4e-34 41