|
Name : Rpal_3504 (Rpal_3504) Accession : YP_001992480.1 Strain : Rhodopseudomonas palustris TIE-1 Genome accession: NC_011004 Putative virulence/resistance : Resistance Product : major facilitator superfamily protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 3752286 - 3753572 bp Length : 1287 bp Strand : - Note : PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bja:blr4054 tetracycline resistance protein DNA sequence : ATGACCGAGGAAGCCGCAGCGCAGCAGACGCCGGTGCCCGGCATGACCGGGCCGCGCCGCGCCGCCGTCGGCTTCATCTT CATCACCATCGCACTCGATATGCTCAGCCTCGGCATGATCCTGCCGATCCTGCCGAAGCTGATCGAGAGTTTCTCCGACG ACAACACCGCTAACGCGGCGCGGATCTACGGGCTGTTCGGCACCGCCTGGGCTCTGATGCAGCTGTTCGCCTCGCCGATC CTCGGCGGGCTGTCGGACCGGTTCGGGCGGCGCCCGGTGATCCTGCTGTCCAATCTGGGGCTCGGCCTTGACTACATCCT GATGGCGCTGGCGCCGTCGCTGTGGTGGCTGTTTGTCGGCCGGGTGATCTCGGGCATCACTTCGGCCAGCATCTCGACCT CGTTCGCCTATATCGCCGACGTCACACCGGCGGAAAAACGTGCGGCGGTGTTCGGCATGGTCGGCGCCGCGTTCGGACTC GGCTTCACCTTTGGGCCGGCGATCGGCGGTCTGCTCGGCGGTGTGGATCCGCGGTTGCCGTTCTGGGTGGCTGCGGCGCT GAGCCTGGCGAATACGTTGTACGGCCTGTTCGTATTGCCGGAGTCGCTACCGCGAGACCGACGCTCGCCGTTCCGCTGGA AGTCCGCCAATCCGATCGGGGCGGTGCGGCTGCTGAGTTCGAACGCGCGATTGGCTGCGCTTGCGGTGGTCGAGTTCTGT GCCGAGGTGGCGCATGTCGCGCTGCCGGCAACCTTCGTGCTCTACACCGGCTATCGCTATGCCTGGGATCAGACCACGAT CGGTCTGGCGCTGGCGTTCGTCGGCGTCTGCACCACCATCGTGCAGGGCGGGCTGGTCGGCCCCGCGGTGAAGCTGCTCG GCGAGCGCAACGCCCAGATCATCGGCTATGGCGGCGGTGCGCTCGGCTTCCTGATCTATGCGCTGGCGCCGAGCGGGACG CTGTTCTGGATCGGCATTCCGGTGATGACGCTGTGGGGCATCGCCGGGCCGGCAACCTCGGGGATGATGACCCGGCTGGT CTCGCCGTCGCAGCAGGGCCAGTTGCAGGGCGCCACCACCAGCGTCAAGAGCGTCGCCGAACTGATTGGCCCGTTCCTGT TCACGATGATCTTCGCGTACTTCATCGATGCCGGCGCACCGCTGCAGCTGCCCGGGGCGCCGTTCCTGCTCGCCGGTGCG CTTCTGGTCGTGTCCGTCGTGATCGTGGCCTTCGCATCGCCCGCCGCCGACAGCAAACAGGCGCCGCAAGCGGCGCCTGA AAGCTGA Protein sequence : MTEEAAAQQTPVPGMTGPRRAAVGFIFITIALDMLSLGMILPILPKLIESFSDDNTANAARIYGLFGTAWALMQLFASPI LGGLSDRFGRRPVILLSNLGLGLDYILMALAPSLWWLFVGRVISGITSASISTSFAYIADVTPAEKRAAVFGMVGAAFGL GFTFGPAIGGLLGGVDPRLPFWVAAALSLANTLYGLFVLPESLPRDRRSPFRWKSANPIGAVRLLSSNARLAALAVVEFC AEVAHVALPATFVLYTGYRYAWDQTTIGLALAFVGVCTTIVQGGLVGPAVKLLGERNAQIIGYGGGALGFLIYALAPSGT LFWIGIPVMTLWGIAGPATSGMMTRLVSPSQQGQLQGATTSVKSVAELIGPFLFTMIFAYFIDAGAPLQLPGAPFLLAGA LLVVSVVIVAFASPAADSKQAPQAAPES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-34 | 42 |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 2e-34 | 42 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-34 | 42 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-34 | 42 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 7e-35 | 42 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 1e-34 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rpal_3504 | YP_001992480.1 | major facilitator superfamily protein | NC_011586.7045189.p0 | Protein | 1e-31 | 42 |
| Rpal_3504 | YP_001992480.1 | major facilitator superfamily protein | AF090987.gene.p01 | Protein | 2e-26 | 42 |
| Rpal_3504 | YP_001992480.1 | major facilitator superfamily protein | AF534183.gene.p01 | Protein | 5e-35 | 42 |
| Rpal_3504 | YP_001992480.1 | major facilitator superfamily protein | NC_010410.6002597.p0 | Protein | 4e-35 | 42 |
| Rpal_3504 | YP_001992480.1 | major facilitator superfamily protein | CP001485.1.gene2821. | Protein | 4e-35 | 42 |
| Rpal_3504 | YP_001992480.1 | major facilitator superfamily protein | X75761.gene.p01 | Protein | 4e-34 | 41 |
