Gene Information

Name : Rpal_1973 (Rpal_1973)
Accession : YP_001990971.1
Strain : Rhodopseudomonas palustris TIE-1
Genome accession: NC_011004
Putative virulence/resistance : Resistance
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 2134002 - 2134331 bp
Length : 330 bp
Strand : +
Note : PFAM: small multidrug resistance protein; KEGG: cbd:COXBU7E912_0802 quaternary ammonium compound-resistance protein QacE

DNA sequence : 
ATGAAGTGGCTCTATCTTCTGATTGCGATCGTCGCTGAGGTCGTCGGTACGTCGGCGCTGAAGGCGTCGCAGGGGTTTAC
GGTGCTGCTGCCGTCGGTGCTTGTTGTCGTCGGCTACGGCGCGGCGTTCTATTTCCTGTCGCTGACGCTGAGCAGCATCT
CGGTCGGCATCGCCTATGCGCTGTGGTCCGGGATCGGGATCGTGCTGATCTCGGCGGTCGGCTGGCTATGGTTCGGCCAG
GCTTTGGACGCCGCGGCGATGGTCGGCATCGCGTTCATCATCGCCGGCGTCGGCATCATCAATTTTTTCTCGAACGTGTC
TGCGCATTAG

Protein sequence : 
MKWLYLLIAIVAEVVGTSALKASQGFTVLLPSVLVVVGYGAAFYFLSLTLSSISVGIAYALWSGIGIVLISAVGWLWFGQ
ALDAAAMVGIAFIIAGVGIINFFSNVSAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
qacEdelta1 AFV53123.1 QacEdelta1 multidrug exporter Not tested AbGRI2-1 Protein 1e-20 66
qacEdelta1 AGF35063.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacEdelta1 CAJ77088.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 1e-20 66
qacEdelta1 AGK36647.1 QacEdelta1 Not tested AbaR26 Protein 1e-20 66
qacEdelta1 AGK06933.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacE-deltal ACF06159.1 quartenary ammonium compound resistance protein Not tested Tn5036-like Protein 1e-20 66
qacEdelta1 AAK02047.1 quaternary ammonium compound and disinfectant protein Not tested SGI1 Protein 1e-20 66
qacEdelta1 AGK06970.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacE-delta1 ACY75523.1 QacE-delta1 Not tested Tn6060 Protein 1e-20 66
qacEdelta1 AAK02056.1 quaternary ammonium compound and disinfectant protein Not tested SGI1 Protein 1e-20 66
ACICU_00227 YP_001844886.1 membrane transporter Not tested AbaR20 Protein 2e-20 66
qacEdelta1 AGK06979.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacE-delta1 ACY75532.1 QacE-delta1 Not tested Tn6060 Protein 1e-20 66
qacEdelta1 ABB48428.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacEdelta1 YP_005797134.1 quaternary ammonium compound-resistance protein Not tested AbaR4e Protein 2e-20 66
qacEdelta1 AGK07016.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacE-delta1 AET25389.1 QacE-delta1 Not tested PAGI-2(C) Protein 1e-20 66
qacEdelta1 ABZ01839.1 QacEdelta1 Not tested SGI2 Protein 1e-20 66
qacEdelta1 YP_005797150.1 quaternary ammonium compound-resistance protein Not tested AbaR4e Protein 2e-20 66
qacEdelta1 AGK07074.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacE-delta1 AFG30112.1 QacE-delta1 Not tested PAGI-2 Protein 1e-20 66
qacEdelta1 CAJ77030.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 1e-20 66
qacEdelta1 AGK07100.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacEdelta1 AGF34989.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacEdelta1 CAJ77049.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 1e-20 66
ebr YP_006098377.1 putative ethidium bromide resistance protein Not tested Tn2411 Protein 2e-20 66
qacEdelta1 AGK07109.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacEdelta1 AGF35028.1 QacEdelta1 Not tested SGI1 Protein 1e-20 66
qacEdelta1 CAJ77052.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 1e-20 66
qacEdelta1 ACN81026.1 QacEdelta1 Not tested AbaR5 Protein 2e-20 66
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 1e-09 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0002 Protein 3e-22 67
Rpal_1973 YP_001990971.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 3e-22 67
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0322 Protein 1e-21 66
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0323 Protein 7e-21 66
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0324 Protein 4e-21 62
Rpal_1973 YP_001990971.1 small multidrug resistance protein NC_002695.1.913273.p Protein 2e-12 57
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0377 Protein 1e-12 57
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0150 Protein 2e-12 57
Rpal_1973 YP_001990971.1 small multidrug resistance protein CP001138.1.gene1489. Protein 1e-15 52
Rpal_1973 YP_001990971.1 small multidrug resistance protein CP004022.1.gene1549. Protein 9e-12 51
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0249 Protein 4e-10 50
Rpal_1973 YP_001990971.1 small multidrug resistance protein AE000516.2.gene3301. Protein 4e-10 50
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0139 Protein 2e-13 48
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0329 Protein 1e-14 47
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0325 Protein 1e-12 43
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0216 Protein 5e-05 43
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0326 Protein 8e-14 42
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0477 Protein 1e-06 42
Rpal_1973 YP_001990971.1 small multidrug resistance protein BAC0327 Protein 7e-13 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpal_1973 YP_001990971.1 small multidrug resistance protein VFG1586 Protein 5e-10 42