Gene Information

Name : Rpal_1407 (Rpal_1407)
Accession : YP_001990422.1
Strain : Rhodopseudomonas palustris TIE-1
Genome accession: NC_011004
Putative virulence/resistance : Unknown
Product : ABC transporter
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 1484047 - 1485699 bp
Length : 1653 bp
Strand : -
Note : PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bbt:BBta_5258 ABC transporter (ATP-binding protein)

DNA sequence :
ATGACCGATAACGTCCTCGAAATCGACAACCTCGTCGTCCGCCTCGGCCGCAGCGGGCATGGCGACAAGGTGATCGACGG
CATCTCACTCAACGTGCGGGCCGGCGAGACGATGTGTCTGGTCGGCGAGAGCGGCTCAGGCAAATCGGTGACGTCACTCA
CGACCATGGGACTGCTGCCGAAGGGCGTGCTGCAAGCGTCCAGCGGCGAGATCCGGCTGGCCGGCGAGAACGTGTTGGCG
GCCAGCGAGCGGCGGCTGCGCCAACTCCGTGCTTCGCGGATGGCGATGATCTTTCAGGAGCCGATGACGGCGCTGAATCC
TGTGGTGCCGGTCGGCAAACAGATCGACGAGGTGCTGCGCTTCCACACCGACCTGCCCGCGCGCGAACGCCGCCGCCGCA
TCCTCGACATGATGCAGCAGGTGCGGCTGCCGGATGTCGAACGGATCTTCGCATCCTATCCGCACCGGCTATCGGGCGGT
CAGCGTCAGCGCATCATGATCGCGATGGCGCTGGTGCTCGAACCGAAACTGCTGATCGCCGACGAGCCAACCACGGCGCT
CGACGTCACCACGCAAAAGCAAATCCTGACGCTAATCCGCGAGCTGCAGCAGGCGCACGGCACCGCGGTGCTGTTCATCA
CCCACGACATGGGCGTGGTCGCCGAGATCGCCGACCGCGTCGCGGTGATGCGGCAGGGCCGGCTGGTCGAGACCGGTCCG
CTGGAGGCGGTGCTACGCCGCCCGCAGATGGAGTACACCCGCAATCTGTTGTCGGCGGTCCCGAGCCTGGTGCCGCGGGC
GCCGCGCCCTGCGAACCGCACGCCGGTCGTGCTGGAAGCCAACGAGCTCGGCAAGGTGTATCGCGAACGCTCGTTGCTCG
GCCGTCACCGCGAGGTGGTGGCGGCGCAGGACGTGACGCTGACGCTGCACAAGGGCCGCACCCTCGGCATCGTCGGCGAA
AGCGGCTCGGGCAAGTCCACCGTGGCGCGCTGCATCGTCCGGCTGATCGATCCGACCTCGGGGGGCATCCGGCTCGCCGG
CCGCGAGATATCCGAGCTGTCGCGCCGGTTGCTGCGGCCGCATCGGCAGAAGATCCAGATCATCTTTCAGGACCCGTATC
GCTCGCTCAATCCGCGCGTCAGCGTTGGTGAGAGCATCGCCGAGGGACCGATCAATTACGGCATGCCGCGCGCCCAGGCG
ATGGCCAAGGCACGGCAGTTGCTCGAACTGGTGCATCTGCCGGCGGATGCGATCTCGCGCTTCCCGCATCAGTTCTCCGG
CGGTCAGCGCCAGCGCATTGCGATCGCCCGCGCGCTCGCGCTCGATCCCGACGTGCTGGTCGCGGACGAAGCGGTGTCGG
CGCTCGACGTTTCGGTGCAGGCGCAGGTGCTGAATCTGCTCGACGAGATCCAGACCCGGCTCGGCATCGCGCTGTTGTTC
ATCACCCACGATCTGCGCGTCGCGGCGCAGATCTGCGACGACGTCGCAGTGATGGAAAAAGGCCGCGTCGTCGAACAGGG
ACCCGCCGCCGAAGTGCTGACCCACCCCAAGCAAGCCTACACCCGCCAACTGCTCGAAGCCGCTCCCGGCCGGCATTGGG
ACTTCGCCAATTTCCGTCCGGTCCAAGAGGCACCGCAGGCGGCGGTGAGTTGA

Protein sequence :
MTDNVLEIDNLVVRLGRSGHGDKVIDGISLNVRAGETMCLVGESGSGKSVTSLTTMGLLPKGVLQASSGEIRLAGENVLA
ASERRLRQLRASRMAMIFQEPMTALNPVVPVGKQIDEVLRFHTDLPARERRRRILDMMQQVRLPDVERIFASYPHRLSGG
QRQRIMIAMALVLEPKLLIADEPTTALDVTTQKQILTLIRELQQAHGTAVLFITHDMGVVAEIADRVAVMRQGRLVETGP
LEAVLRRPQMEYTRNLLSAVPSLVPRAPRPANRTPVVLEANELGKVYRERSLLGRHREVVAAQDVTLTLHKGRTLGIVGE
SGSGKSTVARCIVRLIDPTSGGIRLAGREISELSRRLLRPHRQKIQIIFQDPYRSLNPRVSVGESIAEGPINYGMPRAQA
MAKARQLLELVHLPADAISRFPHQFSGGQRQRIAIARALALDPDVLVADEAVSALDVSVQAQVLNLLDEIQTRLGIALLF
ITHDLRVAAQICDDVAVMEKGRVVEQGPAAEVLTHPKQAYTRQLLEAAPGRHWDFANFRPVQEAPQAAVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-79 45
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-79 45
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 3e-79 45
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-79 45
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 3e-92 43