Gene Information

Name : pchD (BCAM2232)
Accession : YP_002234830.1
Strain :
Genome accession: NC_011001
Putative virulence/resistance : Virulence
Product : putative pyochelin biosynthetic protein PchD
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG1021
EC number : -
Position : 2502352 - 2504001 bp
Length : 1650 bp
Strand : +
Note : -

DNA sequence : 
ATGCAATCCTCCCCTTCCTCCCTGGCGGCGGCCGTGCCGGCCGACGCGCCCGACTGGCCCGACGACTTCGCGCGCCGCTA
TCGTGACGCCGGCTACTGGCAGGACACGACGTTCTTCGACGCGCTCGATGCCTGCGCGCAGCGCCATCCCGACGCGCTCG
CCGTCGTCGACGGCGCGCTGCGGCTGTGCTATCGCGATCTGCTCGCGCGCATTCGCCGCCTCGCGGGCGGCCTCGCGCGC
CTCGGCCTGGTACGCGGCGACGCGGTCGTCGTCCAGTTGCCGAACGGCGCGCGCTTCATCGAGACGTGCTTCGCGCTGTT
CCAGCTCGGCGTGCGGCCGGTGCTCGCGCTGCCCGCGCACCGTCACTACGAGATCGGCGCGTTCTGCCGCTTCGCCGGCG
CGCGCGCTTATCTCGGCGCGTCGCAGCTCGGCGATTTCGACTGCCGGCCGCTCGCGGCCGCCTTGCAGGCCGAGTGCCCA
ACGCTCGAGCACATCGTGATGGCCGGCGACGACCACGCATTCACGTCGTTCGACGCGCTGTACGACGCGGCGCCCGTGCT
CGACTGCGCGGCGCGCGCCGACGATATCGCGTGCTTCCAGTTGTCAGGCGGCACGACCGGCACGCCGAAGCTGATTCCGC
GCCGCCATCGCGAATACCTGTACAACGTGCGCGCGTGCAGCGCCGCGAGCGGGTTCGATGTCGACACCGTCTATCTGGCC
GCGCTGCCGATGGCGCACAACTTCACGCTGTGCTGCCCCGGCACGATCGGCGCATTGCTCGCGGGCGGCCGGGTGGTGAC
GACCGCGCGGCCCGAGCCCGACCAGAGCTTCGCGCTGATTGCGCAGGAACGTGTCACGCATACCGCGCTCGTGCCGCCGC
TCGCGCTGCTGTGGCTCGACGAGCAGCCGCAACGGCAGGCCGACCTGTCGAGCCTGCGCGTGCTGCAGGTCGGCGGCGCG
CGGCTGATGGACCACGCGGCCGAACGCGTGACGCCCGTGCTCGGCTGCCGGTTGCAGCAGGTGTTCGGCATGGCCGAAGG
GCTGATCTGCTGCACGCGGCTCGACGACGCGCCCGAACGGATCGCGCACACGCAGGGCCGCCCGGTCTCGGACGGCGACG
AAGTGCGCATCGTCGACGCAACCGGCGCACCGGTCGCGCCCGGCGAGATCGGCGAACTGCAGGTACGCGGCCCGTACACG
ATCCGCGGCTACTACCGGCTCGCGGCGCACGACGCGACGGCATTCACGGCCGATGGCTTCTATCGCAGCGGCGACCGCGT
GCGGCGCACCGCGGACGGCGACCTGGTCGTCGAAGGCCGCGACAAGGACCAGATCAACCGCGGCGGCGAGAAAGTCTCGG
CCGAGGAAGTGGAAAACCTGCTGCTCGCGCATCCGCAGGTGCACGACGCGGCGGTCGTCGCGATGCCCGATCCGATGCTC
GGCGAACGGACCTGCGCGTTCGTCGTCGCGCGCGCGCCTGCCCCGTCCCGACTCGTGCTGAAACGCTACCTGCGCGACTG
CGGGCTCGCGGCGTTCAAGATCCCCGACCGCATCGAATTCATGCCGCGCTTTCCCGAAACCGGCATCGGCAAGACCAGCA
AGAAATCGCTGCGCGACCTGTTGCGCCGCCAGTTGCAGGCGGCCGCATGA

Protein sequence : 
MQSSPSSLAAAVPADAPDWPDDFARRYRDAGYWQDTTFFDALDACAQRHPDALAVVDGALRLCYRDLLARIRRLAGGLAR
LGLVRGDAVVVQLPNGARFIETCFALFQLGVRPVLALPAHRHYEIGAFCRFAGARAYLGASQLGDFDCRPLAAALQAECP
TLEHIVMAGDDHAFTSFDALYDAAPVLDCAARADDIACFQLSGGTTGTPKLIPRRHREYLYNVRACSAASGFDVDTVYLA
ALPMAHNFTLCCPGTIGALLAGGRVVTTARPEPDQSFALIAQERVTHTALVPPLALLWLDEQPQRQADLSSLRVLQVGGA
RLMDHAAERVTPVLGCRLQQVFGMAEGLICCTRLDDAPERIAHTQGRPVSDGDEVRIVDATGAPVAPGEIGELQVRGPYT
IRGYYRLAAHDATAFTADGFYRSGDRVRRTADGDLVVEGRDKDQINRGGEKVSAEEVENLLLAHPQVHDAAVVAMPDPML
GERTCAFVVARAPAPSRLVLKRYLRDCGLAAFKIPDRIEFMPRFPETGIGKTSKKSLRDLLRRQLQAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 5e-97 51
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 6e-97 51
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 4e-98 50
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 6e-98 50
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-98 50
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 5e-98 50
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-98 50
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 5e-98 50
ybtE CAA21394.1 - Virulence HPI Protein 5e-98 50
irp2E YP_005134497.1 siderophore biosynthetic protein Virulence Not named Protein 1e-62 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pchD YP_002234830.1 putative pyochelin biosynthetic protein PchD VFG0168 Protein 2e-168 69
pchD YP_002234830.1 putative pyochelin biosynthetic protein PchD VFG0932 Protein 2e-97 46
pchD YP_002234830.1 putative pyochelin biosynthetic protein PchD VFG1817 Protein 9e-90 46