Gene Information

Name : bcscV (BCAM2057)
Accession : YP_002234661.1
Strain :
Genome accession: NC_011001
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4789
EC number : -
Position : 2288012 - 2290219 bp
Length : 2208 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTGAACCGAAGGCGCTCCCCCGCGACTGGCAGCGGTTGTTTTCCGCCGGCCGCGGCGTGTCCGGACGGCGCCTCGG
GGGCGCGTCGCCGCGCGCCGACCTGTTTCTCGCGACCTTCATCGTCGCGGTCGTCGCGCTGTTCATCCTGCCGCTGCCGC
AGGCCGCGCTCGACGGGATGATCTCGCTGAATCTGGCGGCGAGCGTCGTGCTGCTGACGGTGTCGACCTACGTGCCGTCG
GCGGTCAGCTTCTCGTCGTTTCCGGCGCTGCTGCTGTTTACGACGCTGTTCCGGCTCGCGCTGAACATCGCGTCGTGCAA
GCTGATCCTGCTGCATGCGAACGCCGGCCACGTGATCGACGCGTTCGGGCGGCTGGTGGTCGGCAACAACGTGGTGGTGG
GCGGCGTGGTGTTCCTCGTGATCGCGGTCGTGCAGTTCATCGTGATCGCGAAAGGGTCGGAGCGGGTGGCCGAAGTCGGC
GCGCGCTTCTCGCTCGATGCGATGCCCGGCAAGCAGATGAGCATCGACGCGGACTTGCGCGCGGGCATCATCAGCGCCGA
CGAAGCGCGCGAGCGCCGCGAGAAACTCGAGCAGGAATCACAGATGCACGGCGCGATGGACGGCGCGATGAAGTTCGTGA
AGGGCGACGCGATCGCGGGCCTCGTGATCGCGTTCATCAACATCGTCGCGGGGATCGCGGTCGGCACGCTGATGCACGGG
ATGGACATCGGCGAAGCGCTGCAGCGTTACGCGATCCTGACGGTCGGCGACGGGATGGCGTCGCAGATTCCGTCGCTGCT
CGTGTCGATCGCGGCCGGCATCGTGACGACGCGCGTCGCGACGCGCGATGCGCGGCAGCGCCAGCTCGGCGAACAGCTCG
GCGAGCAACTGGGTGCGCATCCGCGCGCGTTGCTGATCGCGGCGTTCGTGCTGAGCGGTTTTCTCGTCGTGCCCGGTTTC
CCGAAATGGTCGTTCGCGCTGATCGCGCTCGGCCTCGGCGCCTTCGCGTTCTCGCAACTGAAGCGCAAGACGTCCGCGCC
GAGCTTCAACCTGATTCATGTCGCGGGGCGCGTGGGCGCGGCCGACGACGGCCAGCCCGCGAAGGTGTCGCACGCGGCGG
GCGTCACGTCGCTGATCGCGGTGTCGCTGTCCGACGACCTGCGCACGAACCTGAACCTCGCGCAATTGCAGGCGGCGCTG
TCGAGCGCGAAGGCGCGCGTCGACGCGGACATCGGCACGGTGTTCCCGCGTATCACGCTGAACGACGACGAAGGCGCGCC
GGCCGGCACGTACCGGATCTACCTGCAGGACGTGCTCGTCGCGCACGGCGCGCTGAAGCCGGGCTGGCTGCTGTGGGACG
GCGTCGCGCCGCTGCCCGAGCGCGCGGAGCGCCAGCCGGCCGAAGCGTTCGGCCCGTTCGCGACCGCGCTGTGGATCAAG
CCCGACGGCGCGGCGCCGGACGGCAAGTGGCTGTCGAGCGAGAGCGCGTTGGCCGCGCACGTCGAGCAGATCGTGCGCCA
GCACGCGGACGAGCTGCTCGGCATCCAGGAGACGCAGGCGCTCGTGCATCTGGTGCGCCGCGATCATCCGGAGCTCGTCG
GCGAACTGACGCGGCTCGTGCCGCTGCAGCGCGTGACCGAAGTGTTGCGCCGGCTGCTGGCCGAACAGGTGCCGATCCGG
AACCTGCGCGTGATCTTCGAGAGCCTGATCACGTGGGCGCCGAACGAGCCCGACGACGTGATCGCGCTGGTCGAGCTCGT
GCGCGTCGACCTGCGCCGGATGATCACCGATCGTCACGCGGGCACGGCGCGCCAGCTGCGGGTCGTGCTGTTCGAGCAGA
ACCTGCAGGAGCGGATCGAGAGCGCGGTGATGCGCACCAAGCAGGGCAATTTCCTCGCGCTGTCGAGCGCGGTCAAGCAG
GACATCGGCGAACAGGTGCGCGCGATCGTGCAGGCCGCGCAGGCGGCCGGCCCCGGCGGCCACGGCAACGCGCAGGGTGG
CGCGCGGCTCGCGGTGATGGTCGCGCTCGGCGCGCGCCGCTACGTGAAGACGATCCTGCAGCCGGTGCTGCCCGAACTCG
CGGTGCTGTCGTACCAGGAAGTCGAGGAGGACGTGCAGTTGCATACGGTCGGCTGGGTGAAGAACCCGCCGGACGACGGC
ACGGTTGGCGCGGGCGCCGACGTGCGCGCGCCGGGGGCCGTGCAATGA

Protein sequence : 
MAEPKALPRDWQRLFSAGRGVSGRRLGGASPRADLFLATFIVAVVALFILPLPQAALDGMISLNLAASVVLLTVSTYVPS
AVSFSSFPALLLFTTLFRLALNIASCKLILLHANAGHVIDAFGRLVVGNNVVVGGVVFLVIAVVQFIVIAKGSERVAEVG
ARFSLDAMPGKQMSIDADLRAGIISADEARERREKLEQESQMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHG
MDIGEALQRYAILTVGDGMASQIPSLLVSIAAGIVTTRVATRDARQRQLGEQLGEQLGAHPRALLIAAFVLSGFLVVPGF
PKWSFALIALGLGAFAFSQLKRKTSAPSFNLIHVAGRVGAADDGQPAKVSHAAGVTSLIAVSLSDDLRTNLNLAQLQAAL
SSAKARVDADIGTVFPRITLNDDEGAPAGTYRIYLQDVLVAHGALKPGWLLWDGVAPLPERAERQPAEAFGPFATALWIK
PDGAAPDGKWLSSESALAAHVEQIVRQHADELLGIQETQALVHLVRRDHPELVGELTRLVPLQRVTEVLRRLLAEQVPIR
NLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGTARQLRVVLFEQNLQERIESAVMRTKQGNFLALSSAVKQ
DIGEQVRAIVQAAQAAGPGGHGNAQGGARLAVMVALGARRYVKTILQPVLPELAVLSYQEVEEDVQLHTVGWVKNPPDDG
TVGAGADVRAPGAVQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 4e-74 43
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 9e-74 43
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 2e-74 43
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 7e-74 43
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 1e-73 42
lssD AAO18050.1 LssD Virulence TTSS locus Protein 5e-90 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
bcscV YP_002234661.1 type III secretion system protein VFG0064 Protein 3e-89 41