|
Name : clpC (LCABL_26830) Accession : YP_001988606.1 Strain : Lactobacillus casei BL23 Genome accession: NC_010999 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding protein ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2635477 - 2637984 bp Length : 2508 bp Strand : - Note : - DNA sequence : ATGGACAACTTATTTACCCCTAGTGCTAAAAATGTATTGCTTTTAGCCCAGGAACAAGCGAAGTACTTCCATCATCATGC TGTTGGGACAGAACATTTGCTCATGGCACTGGTCATGGAAAAAGATGGTATCGCTGGTAAGACGCTGCGTCAGTTAGGGG TCACTGAAAATGATGTCCATGACGAGATCGAGCGCTTCACAGGGTATGGGACTGTTGATGCCGCTGGTCAAGCTAGTGAT AGTTATTTGCCTTACTCACCAAAAGGTAAAGAGATTTTGGCGTTTGCAGGTGACGAAGCAAAACGGTTAGGTGCTTTAAA GATCGGTACCGAGCACGTTTTGCTTGGCTTGCTACGTGAAGATGACATCTTGGCAGCACGGATTTTGCAAAACCTTGGTC TCAGTCTTTCGAAGACGCGTCAAATGGTTTTCAAGAAGATGGGGATTGCGGACACTGCAGCAAAGCGTCGCCCAATGGCA CGTGGCGGTGCTCGTCAAGATGGACAAGGTACGCCAACGCTAGATGGTTTGGCGCGGGATTTGACTCAAATGGCGCGCGA GAATCGGATGGATCCGGTTGTTGGGCGTGACAAAGAAGTACGCCGGCTGATCCAGATTCTGGCACGGCGGACAAAGAACA ACCCTGTACTGATTGGCGAACCTGGTGTTGGTAAAACTGCAATTGCAGAAGGCTTTGCTGAGAAAATTGTGTCTGGTAAA GTGCCGGATGACATGGTCAACAAGCGTTTGATGATGCTTGACATGGGTTCACTTGTCGCTGGCACCAAGTATCGTGGTGA GTTTGAAGATCGGCTGAAGAAGATCATTGATGAAATTTATAAAGATGGCAATGTCATTTTGTTCATTGATGAATTGCATA CTTTGATCGGTGCTGGCGGCGCAGAAGGCGCTATTGATGCTTCCAATATTTTGAAACCGGCATTAGCTCGTGGTGAATTA CAATTGATCGGTGCCACGACCTTAGATGAATATCAAAAGTATATTGAAAAAGATGCTGCTTTGGAGCGGCGGTTTGCGAC GATTCAAGTCGACGAACCAACTGAAGAAGAAGCTGAACAAATTTTGAAGGGCTTGCGTCCTCGTTATGAGGCGCATCACG GTGTCACGATTACTGACGAAGCGCTGCATCAGGCGGTGGTTTTGTCATCACGGTACATCACGACACGGTTTTTGCCTGAC AAGGCAATTGATCTAGTTGACGAAAGTGCGGCGAAGGTTCGCTTGGACAAGGCCAATGTTGAGACGAAGGCCGACAAGCT TCAGGATGAACTGGCCAAGCTGGTAGCTGATAAAGAAGACGCTATTGACCATCAAGATTTCGAAACGGCTGCGAACATCC GGACTCAGGAAGCTGATTTAAAAACGAAGTTGGCCGACACGCCTGAACCAGTTAATGAAAGTGGCGTTCGAACTGACATT AAAGTGACGGGCGACGATGTGGCAGAAGTGGTTTCTCAATGGACCGGTGTGCCAGTCACCCAGTTGCAGAAAAAAGAATC CGATCGGTTGGTTAACTTGGAGAAGATCCTGCATGAGCGGGTTGTTGGCCAAGACGAAGCAGTTTCCGCTGTTGCGCGTG CTATCCGGCGTGCTCGTTCTGGTTTGAAAGATCCGACGCGGCCAATTGGTTCCTTCATGTTCCTCGGGCCGACAGGTGTT GGGAAAACGGAGCTGGCTAAGGCGTTAGCCGAGGCAATGTTTGGTTCTGAGGATGCCATGATCCGGGTTGATATGTCTGA GTACATGGAGAAATTTAGTACCAGTCGGTTGATCGGCGCGGCCCCTGGTTACGTTGGTTACGACGAAGGCGGTCAACTAA CCGAAAAAGTCCGCAACAAGCCTTACTCGGTTGTGTTGTTGGACGAAGTTGAAAAGGCGCATCCAGATGTCTTTAACATT TTGCTGCAGGTGCTGGATGATGGCTATTTAACCGATTCGAAGGGTCGGCGGGTTGATTTCCGTAACACGATTTTGATCAT GACTAGTAACATCGGCGCAACCGCTATCCGTGACGATAAGACTGTTGGCTTTGGTGCCAAGGATCCACAAGCTGACTTTA ATGCCATGAAGAGCCGGATGCTGGACGAACTTAAAAAAGCGTTCCGACCAGAATTCCTTAACCGAATTGATGAAACCGTG GTCTTCCACAGTCTCAACAAGGCTGAGCTGCATGAAATCGTTAAGATCATGACGAAGACAGTGCTTAGTCGCATTAAGGA TCAAGGGATTGACGTTAAAATTACCCCAGCCGGTATTGACGCTGTCGCCGCTGCCGGCTTCGATCCAGAGTACGGTGCAC GTCCAATTCGGCGGGCACTGCAAACCGGTGTCGAAGATCAGTTAAGTGAACTCTTATTGACAGGCCAAGCTAAAACCGGT GACTTGATCCAAATCGGTGCTAAAAAAGGCAAGCTGACATTTACTATTAAAGAGAACAAAGGCAAGCAAAAAGAAAACGG TGCTTCAAAAGAACCCGTTAAAGCCTAG Protein sequence : MDNLFTPSAKNVLLLAQEQAKYFHHHAVGTEHLLMALVMEKDGIAGKTLRQLGVTENDVHDEIERFTGYGTVDAAGQASD SYLPYSPKGKEILAFAGDEAKRLGALKIGTEHVLLGLLREDDILAARILQNLGLSLSKTRQMVFKKMGIADTAAKRRPMA RGGARQDGQGTPTLDGLARDLTQMARENRMDPVVGRDKEVRRLIQILARRTKNNPVLIGEPGVGKTAIAEGFAEKIVSGK VPDDMVNKRLMMLDMGSLVAGTKYRGEFEDRLKKIIDEIYKDGNVILFIDELHTLIGAGGAEGAIDASNILKPALARGEL QLIGATTLDEYQKYIEKDAALERRFATIQVDEPTEEEAEQILKGLRPRYEAHHGVTITDEALHQAVVLSSRYITTRFLPD KAIDLVDESAAKVRLDKANVETKADKLQDELAKLVADKEDAIDHQDFETAANIRTQEADLKTKLADTPEPVNESGVRTDI KVTGDDVAEVVSQWTGVPVTQLQKKESDRLVNLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGV GKTELAKALAEAMFGSEDAMIRVDMSEYMEKFSTSRLIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDEVEKAHPDVFNI LLQVLDDGYLTDSKGRRVDFRNTILIMTSNIGATAIRDDKTVGFGAKDPQADFNAMKSRMLDELKKAFRPEFLNRIDETV VFHSLNKAELHEIVKIMTKTVLSRIKDQGIDVKITPAGIDAVAAAGFDPEYGARPIRRALQTGVEDQLSELLLTGQAKTG DLIQIGAKKGKLTFTIKENKGKQKENGASKEPVKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_001988606.1 | ATP-dependent Clp protease ATP-binding protein ClpC | VFG0079 | Protein | 0.0 | 61 |
| clpC | YP_001988606.1 | ATP-dependent Clp protease ATP-binding protein ClpC | VFG0080 | Protein | 2e-146 | 48 |
