Gene Information

Name : LCABL_21680 (LCABL_21680)
Accession : YP_001988093.1
Strain : Lactobacillus casei BL23
Genome accession: NC_010999
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2096015 - 2096773 bp
Length : 759 bp
Strand : -
Note : -

DNA sequence : 
ATGGACAAGCAACCTGTCGTAACTGTTGACAACGTTACGAAAACCTATGGTAAAAAAGGGGAAAAACAAACACCCGCATT
GAAAGGTGTCAGTTTCGAAGTACAACCCGGTGAATTCGTCGGCATCATGGGCGCATCAGGTTCAGGGAAAACGACCTTGC
TTAATATCCTTAGTACGTTAGATACACCGACTTCTGGCTCCGTTTTGATCAAAGGTGCTGACGTCACAAAATTAAAAGGG
GATGCCTTATCAGATTTTCGAGCTAAAAAAATCGGTTTCATTTTCCAAGATTTTAATTTGTTGGAGAACCTAACTGGCCG
CGAAAATATTGCCCTACCGCTCGCGTTGCAAAATGTGAGTGCGAAGAAGCAGGCGGCGGCTGTTGATAGCATTGCCCAAA
CATTAGGAATCAATGAAGTGCTCGACCACTATCCAACGGAGTTATCTGGTGGTCAAAAACAACGAGTTGCCGCTGCCCGG
GCATTGGTGCAGAAGCCAGATATCCTGTTCGGGGATGAGCCGACGGGTGCTTTGGATTCCAAGTCAGCCCGTGAGTTATT
GGATACCATGGAACAGTTGAATAAGGAACAGGATGTCTCTATCTTGTTGGTCACCCATGATCCGTTTTCGGCTAGTTATG
CCAGCCGTATTTTGTTCATTAAAGATGGGCAAATCGGTTCCGAGCTGGTCCATGGTGATAAGAGTCAGGAAGCCTTCTAT
CAGGAGATTCTTGACACACTCGGCACATTTCAAAAGTAA

Protein sequence : 
MDKQPVVTVDNVTKTYGKKGEKQTPALKGVSFEVQPGEFVGIMGASGSGKTTLLNILSTLDTPTSGSVLIKGADVTKLKG
DALSDFRAKKIGFIFQDFNLLENLTGRENIALPLALQNVSAKKQAAAVDSIAQTLGINEVLDHYPTELSGGQKQRVAAAR
ALVQKPDILFGDEPTGALDSKSARELLDTMEQLNKEQDVSILLVTHDPFSASYASRILFIKDGQIGSELVHGDKSQEAFY
QEILDTLGTFQK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-37 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-37 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCABL_21680 YP_001988093.1 ABC transporter NC_012469.1.7686878. Protein 5e-44 43
LCABL_21680 YP_001988093.1 ABC transporter CP001581.1.gene598.p Protein 1e-38 42
LCABL_21680 YP_001988093.1 ABC transporter NC_008702.1.4606598. Protein 4e-36 42
LCABL_21680 YP_001988093.1 ABC transporter CP001581.1.gene798.p Protein 2e-38 42