Gene Information

Name : lpsB1 (RHECIAT_PC0000350)
Accession : YP_001984980.1
Strain :
Genome accession: NC_010997
Putative virulence/resistance : Virulence
Product : galactosyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 377401 - 377967 bp
Length : 567 bp
Strand : -
Note : -

DNA sequence :

GTGGGTTTGAAACGGGCGGTCGATATTCTTCTGGCTGTGGTCGCGTCGGTCATCCTGTTTGTTCCGATCCTTGTCGTCGC
TCTCTGCGTTCGCATGACTTCGCCGGGCCCGATCCTCTACTGGTCCAAACGTGTCGGCCGCTTCAATCAGATCTTCCTGA
TGCCGAAATTTCGCAGCATGCGCGTCGACACGCCGACGGTTGCCACACATCTGCTCGAAAATCCCGATCGGTTTCTGACC
CCCATCGGTTCGTTTCTGCGCAAGTCCAGCCTCGACGAACTGCCGCAGCTCTGGTGCATTCTGGGGGGCAGGATGAGTTT
CGTCGGGCCTCGGCCAGCGCTCTACAATCAGTATGATCTGATCGAATTGCGGACGGCCCACGGCGTCGACAAACTCCTGC
CTGGATTGACGGGGTGGGCTCAGATCAACGGCCGCGACGAATTGCCGATTCCGGAGAAAGTGAAATTCGACGTCGAATAT
CTTCACCGGCGCTCGATCGGCTTCGATATGCGCATCCTGTTTTTGACGGCCGGGAAGGTCATCCGCCGCAAGGGAATAAA
GCATTAA

Protein sequence :

MGLKRAVDILLAVVASVILFVPILVVALCVRMTSPGPILYWSKRVGRFNQIFLMPKFRSMRVDTPTVATHLLENPDRFLT
PIGSFLRKSSLDELPQLWCILGGRMSFVGPRPALYNQYDLIELRTAHGVDKLLPGLTGWAQINGRDELPIPEKVKFDVEY
LHRRSIGFDMRILFLTAGKVIRRKGIKH

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
cap1N	AAL26667.1	type 8 capsule synthesis gene	Virulence	SCCcap1	Protein	2e-33	47
SSP0070	YP_300160.1	capsular polysaccharide synthesis protein	Not tested	SCC15305cap	Protein	1e-33	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
lpsB1	YP_001984980.1	galactosyltransferase	VFG1369	Protein	1e-29	48
lpsB1	YP_001984980.1	galactosyltransferase	VFG1309	Protein	4e-35	45