|
Name : lpsB2 (RHECIAT_PC0000349) Accession : YP_001984979.1 Strain : Genome accession: NC_010997 Putative virulence/resistance : Virulence Product : dTDP-glucose 4,6-dehydratase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 375283 - 377229 bp Length : 1947 bp Strand : - Note : - DNA sequence : GTGCCGATGCAGGCGCTCGTCGCCCCTCTGCTGGCGATGCCGCGTCCTGCCAAACGCGCGCTCGCCTTGCTGGTGGATTC GAGCTTTTGCGTCCTGACGATCTGGCTGGCTTATTGCTTCCGACTGAACGAATGGACGGTGCTGACCGGCGTGCAGTGGT TGCCGGTCTTCGTCTCCCTGTGCATGGCCCTTCCTATCTTCATCGTCATGGGCATGTATCGGGCAATCTTCCGCTACGCC GGCCTTGCCGCTTTCATCGCGGTTTTGAAGGCTATTGCGATCTACGGCGTCGCCTTCATGACGATTTTTACTGCGCTGAG CGTCCCTGGCGTTCCGAGAACGGTCGGTATTCTTCAGCCTTTCCTGCTGCTGATTGCGATCGGCCTGTCGCGACTGGGCA TCCGCTATTGGCTCGGCGATACCTATCAGCGTATCCTTCACCAGAATACGCTCGCCAAGGTGCTGATCTACGGGGCAGGG AATGCCGGCCGACAATTGGCCGGCGCTCTGACGAACAGCGCCGAACTCAATGTCGTCGGTTACCTGGACGATGATCCGCG TCTTAAGGGCGGCATCATGGGCGGCTTGCCGATCTACGACCCGTCGGATCTTCCGGTGCTCGCCGAAGCTCTTGGCGTGC ACAACGTGCTTCTTGCTTTGCCATCCGCATCGCGGCAGCGGCGCAATGAAATCCTCGAGCGCATTCGCAAAGCCAGGGTG AATGTTCGGACATTGCCGGACCTCACGGCGCTTGCTCAGGGCCGTGTCGCCGTCTCCGACATTCGCGAGCTGGAGATCGA AGATCTGCTGGGCAGGGAAGCGGTGGCGCCGCGGCAGGAATTGCTCGACAAGGCGATGCGCAAAAAGGTGGTGATGGTCA CGGGCGCTGGCGGTTCCATCGGTGGTGAACTCTGTCGGCAGATTCTGCGCAACGCGCCTTCGAGCCTCATCCTCATCGAT CAGAACGAGTTCGCGCTTTATAATATCCACGCCGAATTGCTGAAGCTGGCCGAACTTTACAAGCAGGAAAGCCTGCAGAT CGTTCCGATCCTTTGTTCCGTCCGCGACCAGGACCGCATGGAACATATCATGCAGAGCTGGCGGCCGCAGACGCTCTATC ATGCCGCCGCTTACAAGCATGTGCCTCTCGTCGAACATAATGCGGTGGAAGGCATCAAGAACAACGTCATGGGGACGCTG ATCACCGCACGCGCGGCGAATAAATGCGGCGTCTTGAATTTCGTGCTGATCAGTACGGACAAGGCCGTGCGTCCGACGAA CGTGATGGGCGCCAGCAAGAGGCTGGCGGAGATGGTTCTGCAAGCGCTTGCTGCAGAACCGGCCGTTGACAGAGTGCGCA CGAATTTCTCCATGGTCCGGTTTGGAAACGTGCTCGGCTCCTCCGGATCCGTCGTGCCGCTGTTCCGGCAGCAGATCAAG GACGGCGGGCCGGTTACCTTGACGCACCCGAAAATAACCCGCTACTTCATGACCATTTCGGAGGCCTCGCAGCTGGTCAT TCAGGCGGGCGCGATGGCCGAAGGTGGGGATGTTTTCCTGCTCGACATGGGCGAGCCCGTCCGCATCGCCGATCTCGCCC GCAAGATGGTGGAGCTTTCGGGATTGGCCGTCCGAGACGAGGATAATCCCGAAGGGGATATCGAGCTTTCCGTGACCGGC CTGAGACCCGGCGAGAAGCTTTATGAAGAACTGTTGATCGGGGATAATCCTGAAACAACCGAACATCCCAGGATTATGAA GGCGCGCGAGGATTTCCTGTTCTGGCCGGAGCTTTCGAAGAAACTCAGCTCGCTCAATGCGGCACTGGATCGAAACGATA TGGTCGCGGCACGTGCGACCTTGGCAGAACTCGTCTCCGGTTATTCCTCAACCGGTGAGGTGTCGGATCTTGCCTTCACC GGCGCCGAAACCATCACGGCAGCCTGA Protein sequence : MPMQALVAPLLAMPRPAKRALALLVDSSFCVLTIWLAYCFRLNEWTVLTGVQWLPVFVSLCMALPIFIVMGMYRAIFRYA GLAAFIAVLKAIAIYGVAFMTIFTALSVPGVPRTVGILQPFLLLIAIGLSRLGIRYWLGDTYQRILHQNTLAKVLIYGAG NAGRQLAGALTNSAELNVVGYLDDDPRLKGGIMGGLPIYDPSDLPVLAEALGVHNVLLALPSASRQRRNEILERIRKARV NVRTLPDLTALAQGRVAVSDIRELEIEDLLGREAVAPRQELLDKAMRKKVVMVTGAGGSIGGELCRQILRNAPSSLILID QNEFALYNIHAELLKLAELYKQESLQIVPILCSVRDQDRMEHIMQSWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTL ITARAANKCGVLNFVLISTDKAVRPTNVMGASKRLAEMVLQALAAEPAVDRVRTNFSMVRFGNVLGSSGSVVPLFRQQIK DGGPVTLTHPKITRYFMTISEASQLVIQAGAMAEGGDVFLLDMGEPVRIADLARKMVELSGLAVRDEDNPEGDIELSVTG LRPGEKLYEELLIGDNPETTEHPRIMKAREDFLFWPELSKKLSSLNAALDRNDMVAARATLAELVSGYSSTGEVSDLAFT GAETITAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 7e-81 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-82 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lpsB2 | YP_001984979.1 | dTDP-glucose 4,6-dehydratase | VFG0029 | Protein | 1e-110 | 48 |
| lpsB2 | YP_001984979.1 | dTDP-glucose 4,6-dehydratase | VFG1300 | Protein | 4e-81 | 44 |
