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Name : CJA_3632 (CJA_3632) Accession : YP_001984085.1 Strain : Cellvibrio japonicus Ueda107 Genome accession: NC_010995 Putative virulence/resistance : Unknown Product : HsdR protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.- Position : 4344576 - 4347788 bp Length : 3213 bp Strand : - Note : identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 DNA sequence : TTGTCCAAACTCAACGAATCCGCCATCGAAGCCTTCGCCATCACATTGCTTGAGCAGCAGGGGTACACCGCTATTCATGG CCTGGATATAGCACCTGACGGTGATACTCCCGAACGTAGCGACTACGCCCAAGTATTGTTGACTGAGCGCCTGGATAAGG CGATCCGCCGTATTAATCCGCGACTGTCTGAGGACGTTTTACTTCAGGCCCGCAAAGATGTTGAGCGTGTGCAGTCGCAG GATTTGTTGGCGAACAACGAAGCTTTTCATCGTCTGTTAACCGAAGGTGTACCTGTCAGTATCCAGCAGGATGGTAATGA ACGCGGCGAGCGGGTGTGGCTGATTGATTTTGATCGGCCGGAAAATAATGAATTTGCGGTAATCAGCCAATTCACAGTGA TAGAAAACCATCAGAACAAACGTCCGGATCTGGTGTTGTTTGTTAACGGTGTGCCGTTGGTAGTCATTGAGCTGAAAAAT GCCGGTGATGAAAACGCAAGTGTGAAAAGTGCGTTTAAGCAAATTGAAACTTATAAAGCATTGATACCGAGCCTGTTTAA CAGTAATGCGTTCATTGTTATTTCTGACGGCCTTGAAGCAAAAGCCGGTTCCATTTCCTCCGGCTTATCACGTTTTATGC ATTGGAAAACAGCGGACGGCAAAGCAGAAGCATCGAAACTGGTGAGTCAGTTAGAAACGCTGATTGTAGGGATGCTTCAC CCAAAGACTCTGCTGGATTTAATACGGCACTTTATTGTGTTTGAAAAAAGCAGCAAAGAAGATCCGGTCAGTGGACTGAT TACCATCAACACGGTTAAAAAACTGGCCGCTTATCATCAATATTACGCAGTTAATGCTGCCGTTGCGTCGACGTTGCGCG CTGCTGATATGGATGGTCATTCCATGATACATGAGAGCCCCGCAAGTTATGGTTTACCGGGTGTCAGTCATCAGCCTAAA GGCGACCGCAAAGCGGGGGTGGTATGGCATACACAGGGTTCCGGCAAGTCGCTGTCGATGGTGTTTTACACCGGTAAAAT TGTGCTCGCATTGAACAACCCTACGGTATTGGTTATCACCGACCGCAACGATCTGGATGACCAGCTCTTTGATACTTTTG CTTCCTCCAAACAATTGTTGCGCCAAGAACCGGTGCAGGCGCAAGACCGAAACCATTTAAAAGAATTATTGCGTGTCGCT TCCGGCGGTGTGGTGTTTTCCACTATCCAAAAGTTCCAGCCGGAAGACGGTAATGTCTACGAACAATTATCAACCCGCAA TAACATTGTGGTAATTGCCGACGAAGCACACCGGACGCAATACGGTTTTTCCGCAAAAACAGTCGATGAAAAAAATTCAA GCGGTGAAGTGATCGGTAAAAAAGTGGTTTACGGTTTTGCCAAATACCTGCGCGATGCATTGCCCAATGCGACCTATTTG GGATTTACCGGCACCCCGATTGAGAAAGCTGATGCCAATACGCCGGCAGTGTTTGGCAATTACGTCGATATCTACGATAT TGCCCAAGCTGTCGAAGACGGTGCAACTGTCCGCATTTTTTATGAAAGCCGTCTGGCAAAAGTCCAGTTATCAGAGGAAG GTAAGAAACTTATTGCAGAACTGGATGAAGAACTTGGCGAAATGGAACTGAATGAAACCCAAAAAGCCAAAGCGAAATGG ACAAAAATGGAAGCGCTGATCGGCAGTGAGAAGCGTATCCGTAATATTGCCAAGGATATTGTTACGCATTTTGAAGCGCG TCAAAAGGTATTCGACGGTAAAGGCATGGTGGTCAGTATGTCACGCCGCATAGCTGCAGAACTTTATGCGGAAATTATCA AGCTTCGCCCTGAATGGTATTCGGATGATTTAACCAAGGGCGTTATCAAAGTGGTGATGACCGCTGCCAGCAGCGACGGC CCATTGCTGGCAAAACACCACACCACCAAAGAGCAACGCAAATTATTAGCCGAGCGAATGAAGGATGATGACGATCCGTT GAAACTGGTGATTGTGCGCGATATGTGGTTGACCGGTTTTGATGCACCGGGAATGCATACGCTTTATATCGATAAACCGA TGAAAGGCCATAATTTAATGCAGGCTATTGCACGGGTTAACCGTGTCCATAAGGATAAACCCGGTGGCTTGGTAGTTGAT TATTTAGGTATTGCTGCCGACCTGAAAGAAGCCCTGTCATTTTATTCTGAAGCCGGCGGTAAAGGCGACCCCACACTGGC ACAAGAGCAGGCCGTGACTCTGATGCTGGAAAAGCTTGAAGTCGTCTCTGCGCTGTTTGATGGGTTTGCTTATGAGAGTT ATTTTGCGGCAGATACATCACAGAAACTGTCCATGATTCTGGCTGCCGAAGAGCATATCCTCAGCCTTGATGATGGCAAG AAACGTTACATCAAAGAGGTCACTGAATTATCACTGGCTTATGCGATTGCCATTCCCCATGAGCAGGCAATTGATGTGAC GGATGAAGTCGGTTTTTTCCAGGCAGTTAAAGCGCGCCTGGTTAAATTTGACAGTACCGAAGATGGCAGTGGTAACGAGG ATGTGGAAACAACCATCCGGCAGGTGATTGATAAAGCATTGGTGTCGGACAAGGTTATTGATGTGTTTGACGCTGCCGGG ATTAAAAAACCGGATATATCTATCTTGTCCGAAGAGTTCCTGGCAGAGTTGAAAGATTATCAGCACAAAAATATTGCGTT GGAAGTTTTGAAAAAAATTCTCAATGATGAGCTGAAAATCCGCCTGAAAAAGAATTTGGTGGAAAGTAAAAAATTGATCG AAATGCTTGAGGAAGCGATCAAGAAATACCATAACAAAATCCTTACCGCTGCGGAGGTAATGGATGCGCTGATCAGTATC AGTAAGGAAATCACTGCATCAGATGAAACTGCAAAGCAAATGGGGCTTTCGGATTTTGAATATGCGTTCTATACCGCGGT TGCAGACAATGACTCTGCCAAGGAATTGATGCAACAGGATACCTTGCGTGAGCTTGCCGTGGTGTTAACCCAGCGGGTGC GTGAAAATGCGAGTATTGATTGGACAATAAAAGAAAGCGTCAAAGCGAAACTGAAAGTCATTGTGAAACGTACTTTGCGG CAATTCGGCTATCCGCCGGATATGCAGTTGTTGGCGACAGAAACGGTATTACGGCAAGCTGAGATAATTGCGAATGAACT TTCAACTGTATAA Protein sequence : MSKLNESAIEAFAITLLEQQGYTAIHGLDIAPDGDTPERSDYAQVLLTERLDKAIRRINPRLSEDVLLQARKDVERVQSQ DLLANNEAFHRLLTEGVPVSIQQDGNERGERVWLIDFDRPENNEFAVISQFTVIENHQNKRPDLVLFVNGVPLVVIELKN AGDENASVKSAFKQIETYKALIPSLFNSNAFIVISDGLEAKAGSISSGLSRFMHWKTADGKAEASKLVSQLETLIVGMLH PKTLLDLIRHFIVFEKSSKEDPVSGLITINTVKKLAAYHQYYAVNAAVASTLRAADMDGHSMIHESPASYGLPGVSHQPK GDRKAGVVWHTQGSGKSLSMVFYTGKIVLALNNPTVLVITDRNDLDDQLFDTFASSKQLLRQEPVQAQDRNHLKELLRVA SGGVVFSTIQKFQPEDGNVYEQLSTRNNIVVIADEAHRTQYGFSAKTVDEKNSSGEVIGKKVVYGFAKYLRDALPNATYL GFTGTPIEKADANTPAVFGNYVDIYDIAQAVEDGATVRIFYESRLAKVQLSEEGKKLIAELDEELGEMELNETQKAKAKW TKMEALIGSEKRIRNIAKDIVTHFEARQKVFDGKGMVVSMSRRIAAELYAEIIKLRPEWYSDDLTKGVIKVVMTAASSDG PLLAKHHTTKEQRKLLAERMKDDDDPLKLVIVRDMWLTGFDAPGMHTLYIDKPMKGHNLMQAIARVNRVHKDKPGGLVVD YLGIAADLKEALSFYSEAGGKGDPTLAQEQAVTLMLEKLEVVSALFDGFAYESYFAADTSQKLSMILAAEEHILSLDDGK KRYIKEVTELSLAYAIAIPHEQAIDVTDEVGFFQAVKARLVKFDSTEDGSGNEDVETTIRQVIDKALVSDKVIDVFDAAG IKKPDISILSEEFLAELKDYQHKNIALEVLKKILNDELKIRLKKNLVESKKLIEMLEEAIKKYHNKILTAAEVMDALISI SKEITASDETAKQMGLSDFEYAFYTAVADNDSAKELMQQDTLRELAVVLTQRVRENASIDWTIKESVKAKLKVIVKRTLR QFGYPPDMQLLATETVLRQAEIIANELSTV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 46 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 46 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 44 |
