Gene Information

Name : int (CJA_3186)
Accession : YP_001983640.1
Strain : Cellvibrio japonicus Ueda107
Genome accession: NC_010995
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 3792839 - 3793810 bp
Length : 972 bp
Strand : +
Note : identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02249

DNA sequence : 
ATGTACAAATCCCCTTTTTTATCAAGCATTTACGATGAAATGATGCGCCGTCGCTACGCCAAGCGAACCATCGAAACCTA
TTTGCATTGGATCAAGCGTTACATTGTGTTCCATAACAAGCAGCATCCGTCCTTGATGGGCGACAGAGAAGTTGAAGCCT
ATCTTGATCATCTGGTTTTACAGCACAATGTCGCGGGACCAACACAAGCACTGGTATTAAATGCACTCAGCTTTCTTTAT
AGGGAGATATTGCACAAACCCTTATCCCTGGAACTAAGGTTTGTCAAAAGTCAAAAAACCCGCAAGCTCCCCGTAGTACT
CACCCGTGACGAAATAACTGCGTTGATGGCTAACATAAGCAGCAACCATTACTTACCGGCAGCATTGATGTATGGCAGCG
GCCTTAGACTCATGGAGGCCGTACGATTGCGAACAAAAGACATAGATTTTGATTACTGCTGTGTGCGGGTCTGGAATGGG
AAAGGAGGAAAGCATCGTACAGTCACCCTGGCCCCAGAGTTAAAAAAGCCTTTAACAGTACAAATACAACGGGTGGAATA
TCTCCTATCCAAGGATTTGCTAAATCCAACCTATGACGGTGTTTGGCTACCACATGCACTCCGGCATAAATATGTTTCTG
CCAATACATCACTGGGTTGGCAATATTTATTTCCATCGGATCGTTTGAGTATCGATCCTGAAAATCAACGGGTCAGACGA
CACCATATTGATGAAAGCGGATTACAAAAAGCCATCAGAAATGCCTCGCAAAAAGCCAATATCCGCAAACATGTTAGCGC
ACATACACTGCGTCATTCTTTTGCCACTCACTTACTAGCATCCGGGGCTGATATTCGTACCGTGCAGGATCAGCTTGGAC
ATACAGACGTTAAGACGACTCAAATTTATACCCACGTTTTGCAAATGGGCGGCAATGCCGTAAAAAGCCCCTTCTCAACG
CTGGGTATTTAG

Protein sequence : 
MYKSPFLSSIYDEMMRRRYAKRTIETYLHWIKRYIVFHNKQHPSLMGDREVEAYLDHLVLQHNVAGPTQALVLNALSFLY
REILHKPLSLELRFVKSQKTRKLPVVLTRDEITALMANISSNHYLPAALMYGSGLRLMEAVRLRTKDIDFDYCCVRVWNG
KGGKHRTVTLAPELKKPLTVQIQRVEYLLSKDLLNPTYDGVWLPHALRHKYVSANTSLGWQYLFPSDRLSIDPENQRVRR
HHIDESGLQKAIRNASQKANIRKHVSAHTLRHSFATHLLASGADIRTVQDQLGHTDVKTTQIYTHVLQMGGNAVKSPFST
LGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 5e-42 44
int1 YP_005160012.1 integrase Not tested Not named Protein 9e-46 43
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 1e-54 43
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 2e-54 43
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 2e-54 43
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 1e-54 43
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 2e-54 43
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 2e-54 43
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 1e-54 43
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 2e-54 43
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 6e-55 43
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 1e-54 43
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 2e-54 43
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 1e-54 43
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 1e-54 43
intI1 AAK02045.1 integrase Not tested SGI1 Protein 2e-54 43
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 1e-54 43
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 1e-54 43
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 2e-54 43
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 5e-55 43
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 1e-54 43
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 2e-54 43
intI YP_001844881.1 integrase Not tested AbaR20 Protein 2e-54 43
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 5e-55 43
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 1e-54 43
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 2e-54 43
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 2e-54 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
int YP_001983640.1 integrase VFG1028 Protein 6e-55 43