|
Name : dnaB (CJA_2978) Accession : YP_001983434.1 Strain : Cellvibrio japonicus Ueda107 Genome accession: NC_010995 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 3493576 - 3494967 bp Length : 1392 bp Strand : - Note : identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 DNA sequence : ATGATGTCCGAAACCACCTTTGAACAGCACCTGGCGCAGACGCTCGCCAACGATCACCTGCCCCATTCAATTGAAGCGGA ACAATCGGTCCTGGGCGGGTTGATGCTCGAAAATAACCGCCTGGATGCGGTGCTGGAGGTGGTTTCCGAGGGCGATTTCT ATCGCCAGGATCACCGTATCATCTTTCGTATGATGATTAGCCTTCAGGAGGCGGCGCAGCCTCTGGATGTGATTACCCTC TCCGAGGAACTGCACAAGCATGACCAGTTGGAGCGGGTCGGCGGTTTGGCGTATCTGGTGGAAATGGCCAACAATACGCC CAGCGCTGCCAACATTGTGGCCTACGCCAAAATTGTGCGTGAGCGCTCCACCCTGCGCCAGTTGATCGATGCGGCCCAGG AAATCAGCAAATCGAGCATGAATCCGGCGGGTCTGGATTCTGATGACCTGTTGCAGCTGGCGGAAAAGCGGGTTGCCGAA ATTGCCGAGGATCGCCCCAAAGAGGGCGGTCTGGTGGGGGTCAACGAACTCCTCAAGGTCACCGTCCAGAAGATCGATGA ATTATTCCGCTCGGGTAGCGATATTACCGGTGTGCCCACCGGCATTGCCGACCTGGATCAGCGCACCTCGGGCTGGCAGG CGGGGGAGTTGGTCATCCTCGCCGCACGTCCCTCCATGGGTAAAACCGCGTTGGCGCTGAACTTTGTGGAAGGTGCCTTG TTCAACCAGTCGCGCCCGGTGGTTGTCTTCAGTATGGAAATGCCATCCTCCGCACTGATTATGCGTATGCTCTCCTCCAT TGGCCGTATCGACCAGGGCAAGATGCGCAACGGCAAGCTGACGGAAGAAGATTGGCCCAAACTCTCGTCAGCGGTAGCCA AACTTAAAGACAAGCTGCTGTTTATCGACGATACCGGTGGCTTGAACCCCCAGGAGATGCGCGCCCGCGTCCGCCGTATC GCGCGTGAGCACGGCAACCCTGGCATGATCATGGTCGACTACTTGCAATTGATGACCGTAGTTGGCAGCGGTGAAGGCCG CACCCAGGAAATCTCTGAAATTTCCCGTTCACTCAAAGGCATGGCCAAAGAGTTTGATTGCCCGATGATTGCACTCTCGC AGCTCAACCGCGGTGTGGAATCCCGTCCCAACAAACGCCCCATGAACTCGGACCTGCGCGAATCCGGCGCTATCGAACAG GACGCCGACGTTATCCTGTTTATCTACCGCGACGAATACTACAACGAAGACAGTCCCGACAAGGGCATAGCCGAACTCAT TATCGGCAAACAGCGCAACGGCGAAATCGGCACCTGCCGCGCCGCCTTCGTCGGCAAATACACCCGCTTTGATAATCTTG CGCCCGAGTATTTCCAGCAGGATCAGTATTAG Protein sequence : MMSETTFEQHLAQTLANDHLPHSIEAEQSVLGGLMLENNRLDAVLEVVSEGDFYRQDHRIIFRMMISLQEAAQPLDVITL SEELHKHDQLERVGGLAYLVEMANNTPSAANIVAYAKIVRERSTLRQLIDAAQEISKSSMNPAGLDSDDLLQLAEKRVAE IAEDRPKEGGLVGVNELLKVTVQKIDELFRSGSDITGVPTGIADLDQRTSGWQAGELVILAARPSMGKTALALNFVEGAL FNQSRPVVVFSMEMPSSALIMRMLSSIGRIDQGKMRNGKLTEEDWPKLSSAVAKLKDKLLFIDDTGGLNPQEMRARVRRI AREHGNPGMIMVDYLQLMTVVGSGEGRTQEISEISRSLKGMAKEFDCPMIALSQLNRGVESRPNKRPMNSDLRESGAIEQ DADVILFIYRDEYYNEDSPDKGIAELIIGKQRNGEIGTCRAAFVGKYTRFDNLAPEYFQQDQY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 7e-98 | 51 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 3e-98 | 51 |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 4e-102 | 50 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 4e-95 | 50 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 4e-95 | 50 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 4e-93 | 49 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 9e-96 | 49 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 7e-91 | 48 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 1e-75 | 44 |
