Gene Information

Name : dnaB (CJA_2978)
Accession : YP_001983434.1
Strain : Cellvibrio japonicus Ueda107
Genome accession: NC_010995
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 3493576 - 3494967 bp
Length : 1392 bp
Strand : -
Note : identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665

DNA sequence :
ATGATGTCCGAAACCACCTTTGAACAGCACCTGGCGCAGACGCTCGCCAACGATCACCTGCCCCATTCAATTGAAGCGGA
ACAATCGGTCCTGGGCGGGTTGATGCTCGAAAATAACCGCCTGGATGCGGTGCTGGAGGTGGTTTCCGAGGGCGATTTCT
ATCGCCAGGATCACCGTATCATCTTTCGTATGATGATTAGCCTTCAGGAGGCGGCGCAGCCTCTGGATGTGATTACCCTC
TCCGAGGAACTGCACAAGCATGACCAGTTGGAGCGGGTCGGCGGTTTGGCGTATCTGGTGGAAATGGCCAACAATACGCC
CAGCGCTGCCAACATTGTGGCCTACGCCAAAATTGTGCGTGAGCGCTCCACCCTGCGCCAGTTGATCGATGCGGCCCAGG
AAATCAGCAAATCGAGCATGAATCCGGCGGGTCTGGATTCTGATGACCTGTTGCAGCTGGCGGAAAAGCGGGTTGCCGAA
ATTGCCGAGGATCGCCCCAAAGAGGGCGGTCTGGTGGGGGTCAACGAACTCCTCAAGGTCACCGTCCAGAAGATCGATGA
ATTATTCCGCTCGGGTAGCGATATTACCGGTGTGCCCACCGGCATTGCCGACCTGGATCAGCGCACCTCGGGCTGGCAGG
CGGGGGAGTTGGTCATCCTCGCCGCACGTCCCTCCATGGGTAAAACCGCGTTGGCGCTGAACTTTGTGGAAGGTGCCTTG
TTCAACCAGTCGCGCCCGGTGGTTGTCTTCAGTATGGAAATGCCATCCTCCGCACTGATTATGCGTATGCTCTCCTCCAT
TGGCCGTATCGACCAGGGCAAGATGCGCAACGGCAAGCTGACGGAAGAAGATTGGCCCAAACTCTCGTCAGCGGTAGCCA
AACTTAAAGACAAGCTGCTGTTTATCGACGATACCGGTGGCTTGAACCCCCAGGAGATGCGCGCCCGCGTCCGCCGTATC
GCGCGTGAGCACGGCAACCCTGGCATGATCATGGTCGACTACTTGCAATTGATGACCGTAGTTGGCAGCGGTGAAGGCCG
CACCCAGGAAATCTCTGAAATTTCCCGTTCACTCAAAGGCATGGCCAAAGAGTTTGATTGCCCGATGATTGCACTCTCGC
AGCTCAACCGCGGTGTGGAATCCCGTCCCAACAAACGCCCCATGAACTCGGACCTGCGCGAATCCGGCGCTATCGAACAG
GACGCCGACGTTATCCTGTTTATCTACCGCGACGAATACTACAACGAAGACAGTCCCGACAAGGGCATAGCCGAACTCAT
TATCGGCAAACAGCGCAACGGCGAAATCGGCACCTGCCGCGCCGCCTTCGTCGGCAAATACACCCGCTTTGATAATCTTG
CGCCCGAGTATTTCCAGCAGGATCAGTATTAG

Protein sequence :
MMSETTFEQHLAQTLANDHLPHSIEAEQSVLGGLMLENNRLDAVLEVVSEGDFYRQDHRIIFRMMISLQEAAQPLDVITL
SEELHKHDQLERVGGLAYLVEMANNTPSAANIVAYAKIVRERSTLRQLIDAAQEISKSSMNPAGLDSDDLLQLAEKRVAE
IAEDRPKEGGLVGVNELLKVTVQKIDELFRSGSDITGVPTGIADLDQRTSGWQAGELVILAARPSMGKTALALNFVEGAL
FNQSRPVVVFSMEMPSSALIMRMLSSIGRIDQGKMRNGKLTEEDWPKLSSAVAKLKDKLLFIDDTGGLNPQEMRARVRRI
AREHGNPGMIMVDYLQLMTVVGSGEGRTQEISEISRSLKGMAKEFDCPMIALSQLNRGVESRPNKRPMNSDLRESGAIEQ
DADVILFIYRDEYYNEDSPDKGIAELIIGKQRNGEIGTCRAAFVGKYTRFDNLAPEYFQQDQY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 3e-98 51
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 7e-98 51
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 4e-102 50
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 4e-95 50
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 4e-95 50
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 4e-93 49
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 9e-96 49
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 7e-91 48
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 1e-75 44