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Name : lysS (CJA_2478) Accession : YP_001982939.1 Strain : Cellvibrio japonicus Ueda107 Genome accession: NC_010995 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2838941 - 2840539 bp Length : 1599 bp Strand : - Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGGCGACCTGGATCAGTTTATTGTTGAAAGCCTTAAGGCCGGTTTGTAATTCCTGGCGTTTTTACTTTTTAAGAATCAG TGACGACACTATGAGCAAAGATACTCCTGCAAGCAACGAAACCTCTGCCGTAAACGCGCAAGATGAAAATAAACTCATGG CCGAACGCCGCCAGAAGCTCGCGGCTATCCGTGAGAAGGGCAATGCCTTCCCTAACGATTTCCGTCGCACGGACAAGAGC GTGGATTTGCAAGCCGCCTTCGGTGAAAAAACCAAGGAAGAGCTGGAAGCGCTCGACCATAAAGTCAGTGTTGCCGGCCG CCTGATGGCCAAGCGCGGCCCTTTTATGGTGCTGCAGGACGGTGATGGCACTATCCAACTCTACGCTGACAAAGCCGCCC AGGAAGTCATTAAAGAAAACTGGGGCGTGTGGGATCTGGGCGACATCGTGGGTGTAACCGGTGCCCTGCACAAATCCGGC AAAGGCGATTTGTATGTAAACCTGGAGCAATTCCAGTTGCTCACCAAATCCCTGCGTCCGCTGCCGGATAAATACCACGG CTTGAGCGACCAGGAAATCCGCTATCGCCAGCGCTATGTTGACCTGATCGTCAACCCGGAAGTGCGCGATACCTTTCGCC TCCGTTCGCAGTGCATCAGCTTTATTCGCAATTACATGAGCGGCCGCGGTTTTATGGAAGTGGAAACCCCCATGTTGCAT GTGATTCCCGGCGGTGCTTCCGCACGCCCCTTCGTGACCCATCACAATGCACTGGATATGGATATGTTTTTGCGTATCGC CCCGGAATTGTATTTGAAGCGTTTGGTGGTTGGCGGTTTTGAGCGTGTGTTTGAAATTAACCGCAATTTCCGCAACGAGG GGGTATCCACTCGCCACAATCCTGAATTCACCATGATGGAGTTCTACCAGGCCTACGCCGATTACAAAGACCTGATGGAT TTGACTGAGGATCTGTTGCGTAAATTGTGTATCGACGTCACGGGTGGTACTACCTTGAAATACCAGGACAGCGAATACGA TTTCGGCAAACCCTTTGTGCGCCTGTCGGTATTCGACTCCATCCTGCACTACAACCCCGATGTGACGGCCGAGCAAATCA GCAGTGTTGCAGGTGCCACCCAGGTTGCTGAGCGTTTGGGCCTGAAAGTCAAACCCGGTACACCCTTGGGTAAAATCCAG ACCGAAATTTTTGAAGAGACGGTTGAGCATAAACTGGATCAACCCACGTTCATTACCGAGTATCCGACAGAGGTATCGCC CCTGGCGCGTCGCAGTGACACCAATCCGGCGGTAACCGATCGCTTTGAGTTCTTTATCGGTGGCCGCGAATTGGCCAATG GTTTCTCCGAGTTAAATGATGCGGAAGACCAGGCGGAACGTTTCCTGGAGCAGGTAAAAGCCAAAGATGCCGGTGATGAC GAGGCCATGTACTACGACGCCGACTTTGTGCGTGCGCTGGAGTACGGTTTGCCGCCCACGGCCGGTGAGGGTATTGGTAT CGACCGTTTGATTATGCTGTTTGCCAATGCACCGTCCATTCGCGATGTGCTGCTTTTCCCGCATATGCGCCCGGAATAA Protein sequence : MATWISLLLKALRPVCNSWRFYFLRISDDTMSKDTPASNETSAVNAQDENKLMAERRQKLAAIREKGNAFPNDFRRTDKS VDLQAAFGEKTKEELEALDHKVSVAGRLMAKRGPFMVLQDGDGTIQLYADKAAQEVIKENWGVWDLGDIVGVTGALHKSG KGDLYVNLEQFQLLTKSLRPLPDKYHGLSDQEIRYRQRYVDLIVNPEVRDTFRLRSQCISFIRNYMSGRGFMEVETPMLH VIPGGASARPFVTHHNALDMDMFLRIAPELYLKRLVVGGFERVFEINRNFRNEGVSTRHNPEFTMMEFYQAYADYKDLMD LTEDLLRKLCIDVTGGTTLKYQDSEYDFGKPFVRLSVFDSILHYNPDVTAEQISSVAGATQVAERLGLKVKPGTPLGKIQ TEIFEETVEHKLDQPTFITEYPTEVSPLARRSDTNPAVTDRFEFFIGGRELANGFSELNDAEDQAERFLEQVKAKDAGDD EAMYYDADFVRALEYGLPPTAGEGIGIDRLIMLFANAPSIRDVLLFPHMRPE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-137 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001982939.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-137 | 59 |
