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Name : gabD (CJA_2087) Accession : YP_001982552.1 Strain : Cellvibrio japonicus Ueda107 Genome accession: NC_010995 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 2409059 - 2410525 bp Length : 1467 bp Strand : - Note : identified by match to protein family HMM PF00171 DNA sequence : ATGTCTGCAGTTAGGCCGGAACTGCTCAAAAGCCAACTTTTTATCGCCGGTGAATGGCGCAATGCCAGTGCGGCGAGTAC CTTTCCCGTTCTCAATCCCGCAACAGGAAAGATAATTATCGAGGTGGCAGATGCCTCTGTAGATGATGCCGGGAGTGCTA TCTCGGCTGCGGCTCATGCTCAAGCTGGATGGGCCGCAATCCCCGTTCAACAACGCTGCCATCTATTGCGTAAATGGTTT GGGCTGGTTACCCGATGCCAGCGCGATTTGGCACATTTGCTAACCCTGGAACAAGGTAAACCGCTGGCAGAAGCTGAGGC TGAAATTGCCTATGGCGCCAGCTACATTGACTGGTTTGCCGATGAGGCAAGGCGTGTATACGGCGATGTCATCCCGCCAC CGGATGGGGGAAAACGTATCCTGACCCTCAAGCAACCTGTCGGTGTTGTCGCGGCAATTACGCCCTGGAATTTTCCCAAT GCAATGCTGGCTCGCAAGATGGCACCGGCCCTTGCGGCTGGGTGTGCATTGGTTGCCAAGCCAGCGGCTGAAACACCCTT GTCGGCTTTGGCACTGGCTTATTTGGCTCAAGAGGCGGGTATTCCTGATGGGGTAATCAATGTGCTTCCCAGTACCCGGT CCCAGGCGTTGGGGGAGGTATTTTGCCATCACCCCCAGGTACAAAAACTTAGCTTTACCGGCTCTACGGCGGTGGGTAAA CAGCTGATCAGTCAGATAGCATCCCAGGTAAAACGCATTTCACTGGAGTTGGGTGGCAATGCACCTTTTATCGTGTTTGA AGATGCCGATATTGACGCGGCTGTTAGCGGCGCTATTGCGAGTAAATTCCGCAATGCGGGGCAGACCTGTGTATGCGCCA ATCGTTTTTATGTGCAGCGATCTATTTATGAGGTATTCCTGGGGCGTTTAATCGCAGCGGTTGAAAAGCTGCATATTGGC AATGGCCTTGAAGAAGGGGTTAACCTTGGGCCATTGATCTCCCCCAAAGCTCAGCAAAAGGTTCACGACCTTGTACAGGC TGCACTTTCCGAGGGCGCCACCCTTGCCTATAGCCAAGCCCTGAGTGCAGGACTGGTCAAGCAGGGATATTTTTATCCAG CACAAATATTGCGCGATGTTCCGGTAAATTCTGTACTGGCTTCTGAAGAAATTTTTGGTCCGGTTGTACCTTTGATCGCT TTTGATACGGAAGATGAGGTGCTCGAATTGGCGAATGCGTCTGACTATGGTCTGGCTAGCTATGCTTATACCCGGGATCG GACGCGTTGCTGGCGGTTATCGCAACAGCTGCAAACCGGCATGTTGGGGTTGAACACCGGGGTTATCTCCAACGCAATGG CTCCCTTTGGGGGAGTCAAACAATCCGGTTGGGGCAGGGAAGGGTCAAAGTACGGGCTTGATGATTACCTGTCCATAAAA TATATCTGTGAGGACTTGGACAACTGA Protein sequence : MSAVRPELLKSQLFIAGEWRNASAASTFPVLNPATGKIIIEVADASVDDAGSAISAAAHAQAGWAAIPVQQRCHLLRKWF GLVTRCQRDLAHLLTLEQGKPLAEAEAEIAYGASYIDWFADEARRVYGDVIPPPDGGKRILTLKQPVGVVAAITPWNFPN AMLARKMAPALAAGCALVAKPAAETPLSALALAYLAQEAGIPDGVINVLPSTRSQALGEVFCHHPQVQKLSFTGSTAVGK QLISQIASQVKRISLELGGNAPFIVFEDADIDAAVSGAIASKFRNAGQTCVCANRFYVQRSIYEVFLGRLIAAVEKLHIG NGLEEGVNLGPLISPKAQQKVHDLVQAALSEGATLAYSQALSAGLVKQGYFYPAQILRDVPVNSVLASEEIFGPVVPLIA FDTEDEVLELANASDYGLASYAYTRDRTRCWRLSQQLQTGMLGLNTGVISNAMAPFGGVKQSGWGREGSKYGLDDYLSIK YICEDLDN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 5e-113 | 53 |
