Gene Information

Name : kdsB (CJA_1782)
Accession : YP_001982259.1
Strain : Cellvibrio japonicus Ueda107
Genome accession: NC_010995
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 2045223 - 2045990 bp
Length : 768 bp
Strand : +
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence : 
ATGAGTTTTTATGTCGTCATTCCCGCCCGCTATGCGTCTACGCGCTTGCCCGCAAAACCATTAAAGGACATTGCCGGCAA
ACCCATGATCCAGCATGTTTATGAGCGCGCCAGCCAAAGCCAGGCCAAGGCAGTCATTATTGCCACTGATGACGCACGTA
TCCAGGCTGTTGCACAGGCATTTGGTGCCCAGGTCGTGATGACTTCTGCCAGCCATAGCTCGGGTACTGATCGCTTACAA
GAGGTTACCCGTACCCTGGGGCTGGCTGCAGATGACATAGTGGTCAATGTGCAGGGGGATGAGCCTTTGATTCCGCCGGC
GGTCATCAACCAGGTCGCTACAAACCTGGCGGCCAATACCTATGCCAGCGTTGCCACCCTGAGCGAGCCAATCCATTACC
TTGAAGATTTCCACAACCCCAATATTGTGAAGGTGGTTGCCGATAAAGCGGGCAGGGCACTGTACTTTAGTCGCGCACCA
ATCCCCTGGCCGCGCGATCATTTTGCAAAACCGGATGTCAACGTCCTGCCGGATAATTTCCCGGCGCAGCGTCATATAGG
TATTTACTCCTATCGTGTCGCTCTGCTGGATCGTTTTGTGACCTGGCCCCAGGCAACGCTGGAATCCATAGAGTCTTTGG
AGCAATTGCGTGTCCTGGCCAATAGCGAGGCAATCCATGTTGCCGAGGCTTGTGCACAGGTACCTGGTGGCGTGGATACC
GAAGCCGATTTACAGCGCGTTAAGGCATTGTTGGAGGTTGGGCAGTGA

Protein sequence : 
MSFYVVIPARYASTRLPAKPLKDIAGKPMIQHVYERASQSQAKAVIIATDDARIQAVAQAFGAQVVMTSASHSSGTDRLQ
EVTRTLGLAADDIVVNVQGDEPLIPPAVINQVATNLAANTYASVATLSEPIHYLEDFHNPNIVKVVADKAGRALYFSRAP
IPWPRDHFAKPDVNVLPDNFPAQRHIGIYSYRVALLDRFVTWPQATLESIESLEQLRVLANSEAIHVAEACAQVPGGVDT
EADLQRVKALLEVGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 4e-37 45
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 3e-37 45
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 2e-37 45