Gene Information

Name : CJA_0139 (CJA_0139)
Accession : YP_001980663.1
Strain : Cellvibrio japonicus Ueda107
Genome accession: NC_010995
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 189479 - 190144 bp
Length : 666 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCGTTTGCTGTTGGTGGAAGACAATGTCGCCCTGGCCGATGAGTTAAATCGCGACCTCAAGCGCCTGGGCTATGCACT
GGATTGGCTGGCCGATGGTCGCGACGCCCTGCACCAGGGCTTGATAGAGCCCTATGACCTGGTGTTACTCGATCTGGGGT
TGCCCGGCACCTCCGGTCTGGATGTCTTGCGCCATTGGCGCGCGCAGGGCTTGCATACACCGGTATTGATCCTCACTGCA
CGCGATAAATGGAGTGAGCGTATCGATGGACTCAAGGCTGGTGCAGACGATTACCTCACCAAGCCTTTCCACCCCGAGGA
ATTGCAATTGCGCATACAGGCCTTGCTGCGCCGCGCCCATGGTTTTGCCAACCAGCCCCAACTCCAGGCGGCAGGCCTGG
TGCTGGATGAGGCGCGCCAGATGGCACAATACCGCGGTGAAACCGTTACCCTGACCGCCGCCGAGTTCAGCCTGCTGCGC
TATTTGATGCTGCATCCCGAACGTATCCTGTCCAAGTCCCAACTGTACGATCACCTTTACAACGGCGAAGCCGAGCGCGA
CTCCAATGTGATTGAGGTGCATATCAATCACCTGCGCCGCAAATTGGGTAAGGACATTATTGAAACCCGTCGCGGCCAGG
GCTATCGCCTCGGGGGTGAGGCTTGA

Protein sequence : 
MRLLLVEDNVALADELNRDLKRLGYALDWLADGRDALHQGLIEPYDLVLLDLGLPGTSGLDVLRHWRAQGLHTPVLILTA
RDKWSERIDGLKAGADDYLTKPFHPEELQLRIQALLRRAHGFANQPQLQAAGLVLDEARQMAQYRGETVTLTAAEFSLLR
YLMLHPERILSKSQLYDHLYNGEAERDSNVIEVHINHLRRKLGKDIIETRRGQGYRLGGEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CJA_0139 YP_001980663.1 DNA-binding response regulator NC_002516.2.879194.p Protein 1e-35 48
CJA_0139 YP_001980663.1 DNA-binding response regulator BAC0487 Protein 2e-27 43
CJA_0139 YP_001980663.1 DNA-binding response regulator BAC0083 Protein 6e-28 41
CJA_0139 YP_001980663.1 DNA-binding response regulator BAC0197 Protein 3e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CJA_0139 YP_001980663.1 DNA-binding response regulator VFG0473 Protein 5e-28 42