Gene Information

Name : kdsB (RHECIAT_CH0000170)
Accession : YP_001976344.1
Strain : Rhizobium etli CIAT 652
Genome accession: NC_010994
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 183695 - 184450 bp
Length : 756 bp
Strand : -
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence : 
ATGAGTGATTCAAATTTGGACGAGGTGCTCGTCTTGATCCCGGCGCGCATGGCCTCCACCCGGCTTCCGGGCAAGCCGCT
CGCCGATATTTGCGGACTGCCGATGATCGTGCAGGTGGCGATGCGCGCCAAAGAGGCAGCCATCGGCCGCGTGGTCGTCG
CCGTCGACGACCAACAGGTGTTCGATGCCGTTTCCGCCGCCGGCTTCGATGTCGTCATGACCAGCAGCGATCACCAATCG
GGTTCCGACCGGATCTTCGAAGCGCTGACGAAAGTCGATCCCGACGGCAAGGCGAAATTCATCGTCAACGTTCAGGGCGA
CCTGCCGACGATCGATCCGCAAACCGTGCGCGCGGCGCTGCGCCCGCTCGAGAACGAGGCGGTCGATATCGGCACGCTGA
CGACCGAAATTGATGATGAGGACGACAAGACCGCGCCGCATATCGTCAAGATCGTCGGTTCGCCGGTCTCCGACACCCGC
CTGCACGCCCTCTACTTCACCCGCGCGACAGCACCCCACGGCAAGGGGCCGCTCTATCACCATATCGGCCTTTATGCCTA
TCGGCGTGCGGCGCTGGAGCGATTCGTCTCGCTCGGCCCATCGACGCTCGAAAGGCGCGAATCGCTCGAGCAGCTGCGGG
CGCTGGAGGCCGGCATGCGCATCGACGTGGAGATCGTTGACACGGTTCCACTCGGTGTCGATACTCCCGCCGACCTTGAG
AAAGCGCGGCGCATCCTCTCCGCCAGAACAGGATGA

Protein sequence : 
MSDSNLDEVLVLIPARMASTRLPGKPLADICGLPMIVQVAMRAKEAAIGRVVVAVDDQQVFDAVSAAGFDVVMTSSDHQS
GSDRIFEALTKVDPDGKAKFIVNVQGDLPTIDPQTVRAALRPLENEAVDIGTLTTEIDDEDDKTAPHIVKIVGSPVSDTR
LHALYFTRATAPHGKGPLYHHIGLYAYRRAALERFVSLGPSTLERRESLEQLRALEAGMRIDVEIVDTVPLGVDTPADLE
KARRILSARTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 1e-28 43
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 2e-28 43
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 4e-29 42