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Name : RHECIAT_CH0000122 (RHECIAT_CH0000122) Accession : YP_001976296.1 Strain : Rhizobium etli CIAT 652 Genome accession: NC_010994 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 134236 - 136497 bp Length : 2262 bp Strand : - Note : ypch00045 DNA sequence : ATGGAATTCCAGATGGCATTTCCGATAGCCGTTATCGACGAGGATTTTGATGGCAAAAGCGCTGCCGGCCGCGGCATGCG CGATCTGGCTGATGCAATCGAGAAGGAAGGTTTCCGGATCGTCTCGGGCGTTTCCTACGAGGATGCGCGGCGCCTCGTGC ATATCTTCAACACCGAATCCTGCTGGCTGGTGTCCGTCGATGGAGCCGAGGACAAGACCACGCGCTGGCAGCTGCTGGGA GAGGTCCTGGCCGCAAAGCGGCAGAGGAACGACCGCCTGCCGATTTTCCTCTTCGGCGACGATACGACCGCCGAAGACGT TCCCGCCGCGGTACTGCGCCACGCCAACGCCTTCTTCCGGCTGTTCGAGGATACGGCGGAATTCATGGCGCGCGCCATCG CGCAGGCCGCCCGCAACTATCTCGACCGGCTGCCGCCGCCGATGTTCAAGGCGCTGATGGACTACACGCTTGAGGGCGCC TATTCCTGGCACACGCCTGGCCACGGCGGCGGTGTCGCCTTCCGCAAGAGCCCGGTCGGCCAGCTCTTCTATACGTTCTT CGGCGAAAACACGCTGCGCTCCGACATCTCCGTATCGGTCGGCAGCATCGGTTCGCTGCTGGATCATGTCGGGCCGATCG CCGAGGGCGAGCGCAATGCGGCCCGCATCTTCGGCACCGACGAGACGCTGTTCGTCGTCGGCGGCACGTCGACGGCCAAC AAGATCGTCTGGCACGGCATGGTCGGGCGCGGCGATCTCGTGCTCTGCGACCGCAACTGCCACAAGTCGATCCTGCACTC GCTGATCATGACGGGCGCCACCCCGATCTATCTCATCCCCTCGCGCAACGGGCTCGGCATTATCGGTCCGATCTCGAAGG ATCAGTTCACGCCTGAATCGATCGCCCACAAGATTGCCGCCAGCCCCTTTGCGGCGCAGACCAGCGGCAAGGTCCGGCTG ATGGTCATCACCAATTCGACTTATGACGGGCTTTGCTACAATGTCGATGCGATCAAGGCGTCGCTCGGCGACGCGGTCGA GGTGCTGCATTTCGACGAAGCCTGGTATGCCTACGCCAACTTCCACGAATTTTACGACGGCTTCCACGGCATCTCGTCGA ACCAGCCCGCACGATCGCAAAACGCCATTACCTTTGCCACGCACTCGACACACAAGCTGCTTGCCGCCCTTTCGCAGGCA TCGATGATCCACGTCCAGCATGCCGAGACCAAGCGGCTCGACATCACACGCTTCAACGAAGCCTTCATGATGCACACCTC GACCTCGCCGCAATACGGCATCATCGCTTCCTGCGATGTCGCGGCTGCCATGATGGAGCAACCGGCCGGGCGGTCGCTGG TGCAGGAGACGATCGACGAGGCGATCAGCTTTCGCCGGGCGATGAACCGCGTGAAAAAACAGGCCGAGGGCAGCTGGTGG TTCGACGTCTGGGAGCCGACGGTTGCCGAGCAGACGCCGAGCGACACCCATGCCGACTGGGTGCTGAAGCCGGGCGATGC CTGGCATGGTTTTACCGGCCTTGCCGAAAATCATGTCATGGTCGATCCGATCAAGGTCACCATCCTTTCGCCGGGCCTGT CGGCGAGTGGAGCGATGGACGAGCACGGGATACCGGCCGCCGTCATCACCAAGTTCCTCTCCTCCCGGCGCATCGAAATC GAGAAGACCGGCCTCTATTCCTTCCTTGTTCTGTTCTCGATGGGCATTACCCGCGGCAAGTGGAGCACGCTCGTCACCGA GCTCATCAATTTCAAGGACCTCTATGACGCCAATGCGCCGCTGACGCGGGCGCTGCCGGCACTCGCCGCAGCCCATCCGC AAGCCTATGCGGGCGTGGGATTGAGAGATCTCTGCGAAAAGATCCATGCGATTTACCGCAAGGACGACGTGCCGAAAGCG CAGCGCGAGATGTACACGGTGCTGCCCGAAATGGCGCTGCGTCCCGCCGATGCTTACGACCGGCTGGTCAAGAGCCGGAT CGAGAGTGTCGAAATCGACGAGCTGATGAACCGCATCCTCGCCGTGATGATCGTTCCCTATCCGCCGGGAATTCCGCTGA TCATGCCGGGCGAGCGGATCACCCAGTCGACGAAGTCCATTCAGGATTATCTGCTCTATGCCCGCGATTTCGACCGCAAG TTTCCCGGTTTCGAAACCGATATCCATGGCCTTCGCTTCGCTCCCGGCGACGGCGGCCGCCGCTACCTCGTCGATTGCAT TGCAGGGGAGGAGCAGGAATGA Protein sequence : MEFQMAFPIAVIDEDFDGKSAAGRGMRDLADAIEKEGFRIVSGVSYEDARRLVHIFNTESCWLVSVDGAEDKTTRWQLLG EVLAAKRQRNDRLPIFLFGDDTTAEDVPAAVLRHANAFFRLFEDTAEFMARAIAQAARNYLDRLPPPMFKALMDYTLEGA YSWHTPGHGGGVAFRKSPVGQLFYTFFGENTLRSDISVSVGSIGSLLDHVGPIAEGERNAARIFGTDETLFVVGGTSTAN KIVWHGMVGRGDLVLCDRNCHKSILHSLIMTGATPIYLIPSRNGLGIIGPISKDQFTPESIAHKIAASPFAAQTSGKVRL MVITNSTYDGLCYNVDAIKASLGDAVEVLHFDEAWYAYANFHEFYDGFHGISSNQPARSQNAITFATHSTHKLLAALSQA SMIHVQHAETKRLDITRFNEAFMMHTSTSPQYGIIASCDVAAAMMEQPAGRSLVQETIDEAISFRRAMNRVKKQAEGSWW FDVWEPTVAEQTPSDTHADWVLKPGDAWHGFTGLAENHVMVDPIKVTILSPGLSASGAMDEHGIPAAVITKFLSSRRIEI EKTGLYSFLVLFSMGITRGKWSTLVTELINFKDLYDANAPLTRALPALAAAHPQAYAGVGLRDLCEKIHAIYRKDDVPKA QREMYTVLPEMALRPADAYDRLVKSRIESVEIDELMNRILAVMIVPYPPGIPLIMPGERITQSTKSIQDYLLYARDFDRK FPGFETDIHGLRFAPGDGGRRYLVDCIAGEEQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 5e-115 | 44 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 1e-119 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RHECIAT_CH0000122 | YP_001976296.1 | lysine decarboxylase | VFG1670 | Protein | 3e-115 | 44 |
