|
Name : smpB (Smlt1983) Accession : YP_001971798.1 Strain : Stenotrophomonas maltophilia K279a Genome accession: NC_010943 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2003650 - 2004153 bp Length : 504 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAGCAAGAACAGCGGCAAGGATAAAGCAAAGAGCGCGACGGCCAACAAGACCATCGCGTTGAACAAGCGTGCCCGCCA CGAGTACCACATCGAAGAACGCTTCGAGGCCGGCCTGGCACTGCAGGGCTGGGAGGTGAAGTCGATCCGCGCTGGCCGCG GCAACATCATCGATGCCTACGCCTACGTGAAGCACGGCGAGATCTTCCTGATCGGCGCCCAGATCACCCCGTTGATCCAG GCCTCCACCCACGTGGTGGCCAACGACCGGCGCGAGCGCAAGCTGCTGCTGCACCGGAGCGAGATCGACAAGCTGGTCGG CAAGGTCGAGCGCGATGGCTACACGATCGTGCCCACCGCGATGTACTGGAGCAAGAACAAGATCAAGCTCGAAGTCGCGC TGGCCAAGGGCAAGCAGACCCACGACAAGCGCGATGCCGCCAAGGACCGCGACTGGGCGATCGAGAAGCAGCGCGTGATG CGTCGCGGCAACCGCGACGCGTAA Protein sequence : MSKNSGKDKAKSATANKTIALNKRARHEYHIEERFEAGLALQGWEVKSIRAGRGNIIDAYAYVKHGEIFLIGAQITPLIQ ASTHVVANDRRERKLLLHRSEIDKLVGKVERDGYTIVPTAMYWSKNKIKLEVALAKGKQTHDKRDAAKDRDWAIEKQRVM RRGNRDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 6e-38 | 52 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-19 | 44 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 4e-21 | 44 |
