Gene Information

Name : APP7_1757 (APP7_1757)
Accession : YP_001969551.1
Strain : Actinobacillus pleuropneumoniae AP76
Genome accession: NC_010939
Putative virulence/resistance : Virulence
Product : capsule polysaccharide modification protein HcsB
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3562
EC number : -
Position : 1953353 - 1954573 bp
Length : 1221 bp
Strand : +
Note : -

DNA sequence : 
ATGATTAGTCATTATTTGGATGATTTGATTGAAAATTCGGATCGAATCCTGTTATTACAAGGTCCGATAGGCTCTTTTTT
TACCGATCTGTCGGAATGGTTACGTACTCAAAATAAAACGGTATTTAAAATCAATTTAAATGCCGGTGATGAATATTTTT
ACCCGAATAGCGTTTTAAATACGTTTGCTTATCGCGATAGCCTAGAAAACTTTCATCATTATCTAGTGAGTTTTTGTCAA
ACTCATCATATTGATCAGGTGATTTGTTTCGGCGATAACCGTAAGTACCATAAAATTGCAAAAAAAGTATGTCAATCTTT
ATCCGTTGGTTTCTGGGCGTTTGAAGAGGGATATTTCCGTCCTAATTACGTTACTTTTGAAAAAAGCGGGGTAAACGCCT
ATTCGCCGATTCCATGTGATGCAACGTATTTCTCTCAATTTGAGAACTTACCCGAGCCGGCAAAACCGCAGCATGTCGCA
AAAGGCTTTTGTCCGATGGCGAAATTGGCGATTCAATATTACGTTTCCGCTTATTATCGTCGTTACCATTATCCTAAATA
TCGCCATCATCGTTTATTAAATGTCTTATATTATGTGAAATTATGGTCGATATCCGGAGTGAAACGTTTACACTATTATC
TATATGATTGGAATTTTGCAAAACGAGTAGAAAAAGGGGAATTCGGCGATTTCTTTATTTTGCCTTTACAGGTTTATGAC
GATAGCCAAATTCTGGTTCACAGCGATTATTCGAGCGTAGAGGCGATTTTACGCGAAGTGTTATTATCTTTTGCGACGAA
AGCGCCGAAGCACCTACGTTTGATCGTAAAACATCACCCGATGGACCGCGGCTTTATTGATTACGGTAAAGTGATTGACG
AATATCTGGAGCAATATCCCGATCTGAAAAAACGAATTTACTATATTCACGATGTACCGATGCCGGTTTTCTTACGTCAC
GGTAAAGGAATGGTCACGCTAAACAGTACCAGCGGTATTTCGGCATTACTACACAATATGCCGGTGAAAACCTTAGGTCG
TTCCAATTATGATTTTGCCGGGCTGACCTATCAAGGCAGCTTAGATGACTTTTGGGTAAATCCGGAAAAACCGGATGACG
GATTATTTAATGCTTACCGAAAATTCCATTTACATAAAACGCATATTAACGGTAGCTTCTATAACAAGGTGATTTTGCGT
TATCCGTATAATCAAAGCTAA

Protein sequence : 
MISHYLDDLIENSDRILLLQGPIGSFFTDLSEWLRTQNKTVFKINLNAGDEYFYPNSVLNTFAYRDSLENFHHYLVSFCQ
THHIDQVICFGDNRKYHKIAKKVCQSLSVGFWAFEEGYFRPNYVTFEKSGVNAYSPIPCDATYFSQFENLPEPAKPQHVA
KGFCPMAKLAIQYYVSAYYRRYHYPKYRHHRLLNVLYYVKLWSISGVKRLHYYLYDWNFAKRVEKGEFGDFFILPLQVYD
DSQILVHSDYSSVEAILREVLLSFATKAPKHLRLIVKHHPMDRGFIDYGKVIDEYLEQYPDLKKRIYYIHDVPMPVFLRH
GKGMVTLNSTSGISALLHNMPVKTLGRSNYDFAGLTYQGSLDDFWVNPEKPDDGLFNAYRKFHLHKTHINGSFYNKVILR
YPYNQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipB NP_273146.1 capsule polysaccharide modification protein Not tested IHT-A Protein 6e-98 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APP7_1757 YP_001969551.1 capsule polysaccharide modification protein HcsB VFG0705 Protein 1e-120 65
APP7_1757 YP_001969551.1 capsule polysaccharide modification protein HcsB VFG0693 Protein 1e-120 65
APP7_1757 YP_001969551.1 capsule polysaccharide modification protein HcsB VFG0260 Protein 3e-98 52