Gene Information

Name : tnpR (pCNB_p21)
Accession : YP_001967665.1
Strain :
Genome accession: NC_010935
Putative virulence/resistance : Virulence
Product : TnpR resolvase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1961
EC number : -
Position : 14802 - 15359 bp
Length : 558 bp
Strand : -
Note : -

DNA sequence :
TTGTACGGTCAACGCATCGGCTACGTTCGCGTCAGCAGCTTCGACCAGAACCCGGAACGGCAATTGGAAGGGGTTCAGGT
GGCGCGGGTGTTCACCGACAAGGCATCCGGCAAGGACACCCAGCGTCCCGAGCTGGAAAGGCTGCTCGCCTTCGTGCGCG
AAAGCGACACCGTGGTGGTGCACAGCATGGATCGCCTGGCACGCAACCTGGATGACTTGCGCCGCATCGTGCAGGGCCTG
ACCAAGCGCGGGGTACGCATCGAATTCGTCAAGGAAAGCCTGGCCTTCACTGGCGAGGATTCGCCGATGGCGAATTTGAT
GCTGTCGGTGATGGGCGCGTTTGCCGAGTTCGAGCGGGCCTTGATCCGCGAGCGGCAGCGCGAAGGAATCGCGCTGGCCC
GGCAGCGGGGTGCGTACCGGGGCCGCAAAAAGTCACTGAACGATGAGCAGATTGCCGAACTGAAACGGCGCGTCGCGGCG
GGCGAGCAAAAGGCCCTGATCGCCCGCGACTTCGGCATTAGCCGTGAAACCTTGTACCAGTACCTGCGCGAGTCCTGA

Protein sequence :
MYGQRIGYVRVSSFDQNPERQLEGVQVARVFTDKASGKDTQRPELERLLAFVRESDTVVVHSMDRLARNLDDLRRIVQGL
TKRGVRIEFVKESLAFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALARQRGAYRGRKKSLNDEQIAELKRRVAA
GEQKALIARDFGISRETLYQYLRES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpR ACF06154.1 resolvase Not tested Tn5036-like Protein 5e-70 94
tnpR ACY75537.1 TnpR Not tested Tn6060 Protein 2e-63 84
tnpR YP_006098373.1 transposon Tn21 resolvase Not tested Tn2411 Protein 2e-63 83
tnpR AAL08439.1 resolvase TnpR Not tested SRL Protein 1e-63 83
tnpR AFV53121.1 Tn21 resolvase Not tested AbGRI2-1 Protein 1e-63 83
res YP_005124341.1 DNA-invertase Not tested Not named Protein 9e-24 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpR YP_001967665.1 TnpR resolvase VFG1030 Protein 5e-64 83