Gene Information

Name : LBF_3114 (LBF_3114)
Accession : YP_001964161.1
Strain :
Genome accession: NC_010842
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3345644 - 3346318 bp
Length : 675 bp
Strand : +
Note : cytoplasmic protein

DNA sequence : 
ATGAAAATATTGATTGTTGATGACGAAGAAGACATTGCAGGCCTAATCCAATTCCACTTGGAAGAAGAAGGTTTCCAAAC
GGAAGTTTGCCATAATGGAATGGAAGTCCTCCCTCGTTTAGAAAAAAACCTACCTGATGGAATTATCTTAGATTTGATGT
TACCTGGCATTGGGGGTATGGACCTTTGCAAACGCATCAAAGAAAAATACCCACAAATTCCAATCCTCATGGTCACCGCC
AAAACAGGTGAAACCGATGTGGTTTTAGGTCTGGAATTGGGTGCGGATGATTACATTCGAAAACCATTCAATATCCGCGA
ATTAGTGGCTCGTGTGAGATCCGTGACTCGTCGGACCACTGACCCAAGCCAAGAAGTGCAAGGTACCATCACAACTGGAA
AAATCCAAATCAATCCTACTGCACACAAAGTATTTGTGGAAGGTACAGAGATTGATTTGACATTAATAGAATTCAAGCTA
TTACAGCTGTTTGCTGGTAATCCTGGGGTTGCCTTTTCTAGAGATAAATTATTAGATCGGATTTGGGGCAAAGATGTATT
TGTAACAGATCGCACAGTGGATGTGAACATCAAACGACTCAGAGACAAACTTCTCTCGGAAAAAGAACGACTCGAAACGA
TCCGCGGAGTCGGTTATCGATTCCGAGATGCGTAG

Protein sequence : 
MKILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKNLPDGIILDLMLPGIGGMDLCKRIKEKYPQIPILMVTA
KTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTRRTTDPSQEVQGTITTGKIQINPTAHKVFVEGTEIDLTLIEFKL
LQLFAGNPGVAFSRDKLLDRIWGKDVFVTDRTVDVNIKRLRDKLLSEKERLETIRGVGYRFRDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-34 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBF_3114 YP_001964161.1 response regulator NC_012469.1.7685629. Protein 3e-35 44
LBF_3114 YP_001964161.1 response regulator AE000516.2.gene3505. Protein 7e-34 44
LBF_3114 YP_001964161.1 response regulator CP004022.1.gene1676. Protein 7e-29 43
LBF_3114 YP_001964161.1 response regulator NC_012469.1.7686381. Protein 4e-35 42
LBF_3114 YP_001964161.1 response regulator NC_002952.2859905.p0 Protein 3e-35 42
LBF_3114 YP_001964161.1 response regulator NC_007793.3914279.p0 Protein 4e-35 42
LBF_3114 YP_001964161.1 response regulator NC_007622.3794472.p0 Protein 3e-35 42
LBF_3114 YP_001964161.1 response regulator NC_002745.1124361.p0 Protein 4e-35 42
LBF_3114 YP_001964161.1 response regulator NC_009782.5559369.p0 Protein 4e-35 42
LBF_3114 YP_001964161.1 response regulator NC_002951.3237708.p0 Protein 4e-35 42
LBF_3114 YP_001964161.1 response regulator NC_003923.1003749.p0 Protein 3e-35 42
LBF_3114 YP_001964161.1 response regulator NC_002758.1121668.p0 Protein 4e-35 42
LBF_3114 YP_001964161.1 response regulator NC_009641.5332272.p0 Protein 4e-35 42
LBF_3114 YP_001964161.1 response regulator NC_013450.8614421.p0 Protein 4e-35 42
LBF_3114 YP_001964161.1 response regulator NC_002695.1.916589.p Protein 3e-29 42
LBF_3114 YP_001964161.1 response regulator BAC0039 Protein 9e-30 42
LBF_3114 YP_001964161.1 response regulator BAC0596 Protein 8e-30 42
LBF_3114 YP_001964161.1 response regulator CP000034.1.gene2186. Protein 9e-30 42
LBF_3114 YP_001964161.1 response regulator CP001138.1.gene2239. Protein 8e-30 42
LBF_3114 YP_001964161.1 response regulator HE999704.1.gene2815. Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBF_3114 YP_001964161.1 response regulator VFG1563 Protein 6e-35 41
LBF_3114 YP_001964161.1 response regulator VFG1702 Protein 1e-34 41