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Name : lysS (Aasi_1242) Accession : YP_001958294.1 Strain : Candidatus Amoebophilus asiaticus 5a2 Genome accession: NC_010830 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1587945 - 1589453 bp Length : 1509 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCATATTCTATAAGCGAACAAGAACTTCTAAGAAGGCAAAAGAAAGAAGAATTAGAAGCTTTAGGTATTAATCCATA CCCCTCAGCAACTTTTGCAAGCAATACCTCTACCCAAGACATTTTATCTAATTTCAATAAAGCACCCGATAATTTTAAAC AGATAAGTATTGCAGGACGTATTATGGGTAGACGCATCATGGGGGCTGCCTCTTTTGTAGAGCTACAAGATGCTAGTGGA AAAATACAGCTTTATGTGCACCGAGATACGTTATGTCCAGGCGATGATAAAAGCTTTTACAATACAGTTTTCAAAAAGTT GCTAGATATTGGTGACCTAATAGGTATAGAGGGATATGTATTTACTACCCAAGTAGGCGAGATTAGTATTCATGTTAATA AGCTTACGCTATTATCCAAAGCTCTTCGCCCACTACCTGTTGTTAAAGAGGATGATAAACAGGTCTATGATGCCTTTACA GACCCAGAACAAAGGTATAGACAACGGTATGTAGATTTACTGGTAACTCCTACCACAAGGTCCATATTTCAAAAAAGGAC TCAAATGATACAAGCCATTCGTCAGTACTTAAACAGCCAAGGATATGATGAGGTAGAAACACCTATTTTGCAACCGCTCT ACGGAGGAGCATCTGCTAGACCTTTTAAAACACACCACAATACGCTAGATATGTCGCTTTATCTTCGTATTGCCAACGAG CTATACTTAAAAAGGCTAATTGTAGGTGGTTATGAGGGCGTATATGAATTTGCAAAAGATTTCAGAAATGAGGGTATGTC GCGTTTTCATAACCCAGAATTTACCATGCTGGAATTGTATGTGGCCTATAAGGACTACAAATGGATGATGAATCTTACTG AAGAATTACTAGAACAGGTAGCACTGCATTTATATGGAACTACAGCAGTACCAGTAGGAACTCATACCATTGATTTTAAA AGGCCCTGGAAAAGGTTTACCATGTTTGAAGCAATACAGCATTTTACAGGCATAGACATTAGTCAGATGGAGGAACTTGA ACTCAGAAAAGCTGCAGCAACGTTATCGGTACCATTAGAAGCATCAGCAGGAAAAGCAAAAATTATTGATGAAATTTTTG GAGCCAAATGTGAACCTAACCTAATTCAACCTACTTTTATCACGGACTATCCAGTAGAAATGTCGCCACTGGCTAAGCAG CATAGAGACAACCCTACTTTGGTAGAACGGTTTGAAGTCATCTGTAATGGAAAAGAAATCTGTAATGCTTTTTCTGAGTT AAATGACCCTATCGAGCAACGTAAACGCTTTGAAGAACAACTTCAATTGGGGCAACGTGGAGATGAAGAAGCTATGATGC TAGACGAAGATTTCTTAAGAGCATTAAGTTATGGTATGCCACCAACAGCTGGCTTAGGCATCGGTATTGATAGACTCGCC ATGATTATGACGAATGCACCTTCTATACAAGAAGTTATTTTCTTCCCACAAATGCGACCAGAACATTAA Protein sequence : MSYSISEQELLRRQKKEELEALGINPYPSATFASNTSTQDILSNFNKAPDNFKQISIAGRIMGRRIMGAASFVELQDASG KIQLYVHRDTLCPGDDKSFYNTVFKKLLDIGDLIGIEGYVFTTQVGEISIHVNKLTLLSKALRPLPVVKEDDKQVYDAFT DPEQRYRQRYVDLLVTPTTRSIFQKRTQMIQAIRQYLNSQGYDEVETPILQPLYGGASARPFKTHHNTLDMSLYLRIANE LYLKRLIVGGYEGVYEFAKDFRNEGMSRFHNPEFTMLELYVAYKDYKWMMNLTEELLEQVALHLYGTTAVPVGTHTIDFK RPWKRFTMFEAIQHFTGIDISQMEELELRKAAATLSVPLEASAGKAKIIDEIFGAKCEPNLIQPTFITDYPVEMSPLAKQ HRDNPTLVERFEVICNGKEICNAFSELNDPIEQRKRFEEQLQLGQRGDEEAMMLDEDFLRALSYGMPPTAGLGIGIDRLA MIMTNAPSIQEVIFFPQMRPEH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 9e-98 | 48 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 6e-81 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001958294.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 5e-98 | 48 |
