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Name : clpA1 (BLD_0010) Accession : YP_001953954.1 Strain : Bifidobacterium longum DJO10A Genome accession: NC_010816 Putative virulence/resistance : Virulence Product : ATP-binding subunit of Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 9047 - 11656 bp Length : 2610 bp Strand : + Note : - DNA sequence : ATGTTCGAACGGTTTACCGACCGTGCACGGCGCGTGATCGTGTTGGCGCAGGAAGAGGCGAGGGCCCTTCAGCACAACTA CATCGGCACCGAACACCTGCTGCTCGGCCTGATCCGCGAAGGTGAGGGTGTAGCCGCCAAGGCACTCGCCTCGAAGGGCG TGGAGCTGGATGCCACCCGCAAGCAGGTTGAAGAAATGATCGGCAAGGGCAACGCGGCTCCGAACGGGCACATCCCCTTT ACTCCGCACGCCAAGCAGGTGTTGGAGTTTTCGCTGCGTGAAGCCCTGCAGCTGGGCCACAGCTACATCGGCACCGAGCA CATCCTGCTCGGCCTGATTCGCGAAGGCGAAGGCGTGGGCACCCAGGTGCTCATCAAGATGGACGTCGATCTGGGCGAGT TGCGTAGCGCGACCATCGATATGATTCGCGGCAACTCCGGCACCGGCACCGGTGACGGCAAGGGCGACTTGGCCAACGCC GGCGGCGTGACGGACAAGCAGAACAAGTCCGGTTCCGCCATCCTCGATCAGTTCGGCCGCAACCTGACCGCCGAAGCCGC TGAAGGCAAGCTGGACCCGGTCATCGGCCGTACCAACGAGATTGAGCGCGTTATGGTCGTGCTTTCCCGCCGCACCAAGA ACAACCCGGTGCTGATCGGCGAGCCCGGCGTGGGCAAGACCGCTGTGGTCGAAGGCTTGGCCCAGAAGATCCAAGCCGGC GACGTGCCGGAAACCCTGAAGGGCAAGCAGGTCTACTCGCTGGACCTCGGTTCCATGGTGGCCGGCTCCCGCTACCGTGG TGATTTCGAGGAGCGCCTGAAGAAGGTGCTGAAGGAAATCAAGACTCGTGGCGACATCGTGCTGTTCATCGACGAGATTC ACACCATCGTGGGCGCCGGCTCGGCTGACGGCGCGCTGGGTGCCTCCGACATGTTGAAGCCGATGCTGGCCCGTGGCGAG CTCCAGACCATTGGTGCCACCACCACCGACGAGTACCGCAAGTACATCGAGAAGGACGCGGCTCTGGAACGCCGTTTCCA GCCGATTCAGGTGCACGAGCCGACCATCGCCGAGACCATCGAGATCCTGAAGGGCCTGCGTTCCCGTTACGAGAACCACC ACCACGTGACCATCACCGATGGCGCGCTGCAGTCTGCCGCAGAGCTGTCCAGCCGGTACATCCAGGACCGTAACCTGCCT GACAAGGCCATCGACCTGATCGATGAGGCCGGTGCACGCCTGCGCATCAAGCGCCTGACCGCCCCGCCTGAGCTCAAGGA ACTCGACGAGAAGATCGCCAAGATCGCCGCCGACAAGGACGAGGCCATCAAGGGCCAGGACTTCGAGAAGGCCGCCGAAC TGCGCGACAAGCAGGAGAAGCTGGAAGCCGATCGCAAGCAGAAGGAAGACTCCTGGCGCGAAGGCGAGTCCGACGTCAAG ATGGTCGTGGACGAGGACGTGATCGCCGAGGTCATCAGCTCCACCACCGGTATCCCGGTGTTCAAGCTGACTCAGGCCGA GTCCAAGAAACTGCTCAACATGGAAGCCGAACTGCACAAGCGCATCATCGGCCAGGACGAGGCGGTTTCCGCCCTGTCCC GCTCTATCCGCCGTACTCGCGTGGGTCTGAAGGACCCGAAGCGCCCGTCCGGTTCGTTCATCTTCGCCGGCCCCACCGGC GTCGGCAAGACCGAGCTGGCCAAGACGCTCGCCGAATTCCTGTTCGACGATGAGGACGCGCTGATTCGCGTGGATATGTC CGAGTTCTCCGAGAAGTACGCGGCTTCGCGACTCTTCGGTGCGCCTCCGGGATACGTCGGCTACGAGGAAGGCGGCGAGC TCACCGAAAAGGTGCGCCGCAAGCCGTTCTCCGTGGTGCTGTTCGACGAGATCGAAAAGGCTCATCCGGACATCTTCAAC ACGTTGCTGCAGGTGCTCGATGACGGCCACCTGACCGACGGTCAGGGCCGCAAGGTGGACTTTAAGAACACCATCATCAT CCTGACCACCAACCTCGGTACGCGAGACATCGCCAAGGCCGCCAACACGGGCTTCAACCTAGGTGCCAACAACGAGTCCA GCTACCAGCGCATGAAGGACCAGGTCAGCTCCGAATTGAAGCAGCAGTTCCGCCCGGAGTTCCTGAACCGTCTGGACGAC ATCATCGTCTTCAAGCAGCTCACCGAGCCGCAGGTGCGCCAGATCGTGGATCTGGACGTCAAGCAGCTCAACGACCGCCT GTTCGACCGTCATATGTCGCTCGAACTCACCGACGCCGCCAAGGACCTGCTCGCGCAGAAGGGCTTCGACCCGCTGCTCG GTGCCCGTCCGCTGCGCCGCGTGATTCAGCGCGACATCGAGGACGCCATCTCCGAGAAGATCCTGATGGGCGATCTCGAA GACGGTCAGCGCGTGATTGTGGATGCGGAAGGCGAGGGTATCCTCGGCGAATTCACCTTCAAGGGTGAGGAGTTCGAGGA GCCGGCCGCCGCCGATAAGCCCGCCGAAGACGGTGCCGCCACTGATGGCGAGACTCCAGCCGACGCCACTCCGGCCACTG AGCCGGCCGAATCCGCTCCCGCCGATTCCGGTGACGCTCCGCAGGAGTAG Protein sequence : MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATRKQVEEMIGKGNAAPNGHIPF TPHAKQVLEFSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGNSGTGTGDGKGDLANA GGVTDKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIQAG DVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGE LQTIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLP DKAIDLIDEAGARLRIKRLTAPPELKELDEKIAKIAADKDEAIKGQDFEKAAELRDKQEKLEADRKQKEDSWREGESDVK MVVDEDVIAEVISSTTGIPVFKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG VGKTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFN TLLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKAANTGFNLGANNESSYQRMKDQVSSELKQQFRPEFLNRLDD IIVFKQLTEPQVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILMGDLE DGQRVIVDAEGEGILGEFTFKGEEFEEPAAADKPAEDGAATDGETPADATPATEPAESAPADSGDAPQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA1 | YP_001953954.1 | ATP-binding subunit of Clp protease | VFG0079 | Protein | 0.0 | 57 |
| clpA1 | YP_001953954.1 | ATP-binding subunit of Clp protease | VFG0080 | Protein | 3e-135 | 51 |
