|
Name : Glov_1513 (Glov_1513) Accession : YP_001951749.1 Strain : Geobacter lovleyi SZ Genome accession: NC_010814 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1584585 - 1586501 bp Length : 1917 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: gme:Gmet_1338 polys DNA sequence : ATGACGATACCGAGAAGTCTACTAAAGTTTTTGCTTGATCTGATATTGATTGTTGTTGCATACAGCTTTGCGCTGTTGCT TGATGAAGACCTCGTTGTTTCTGCTGTCTATCTTACTCGCTTTTTACGATCATTACCGTATGTTGTTGTAATTCAAGCCT TGGTTTTTGTTACTTCAAGGCTTTATAGTAACATCTGGCGATACGCTTCGTTGCAGGATGTGCTTGAGATCTTTAAGGCG GTCACACTTGCCGTTATTATGACCGCCTTTGGGCTTTTGTTTGTCCGCGATACCCTGGTGTTTTACCGAACATTATTGAT TCTTGACTGGGGTGTTTTGATGGCTCTGATGCTCTCCAGTCGCTTTGTGCTTCGGTTTAATCGTGAAAACTGCAGCCTGC TGCCCCAATGTTTGAAACAACAACCTAAAGGTCGTGCAACCCTGATCGTTGGTGCTGGTGATGCAGCCAACTTACTGATT AAGGAGATACAAAAGCAGCATGATACCGGCTTCAGAATTGTTGGCCTGGTTGATGACAATCCAGAAAAACAAGGATTGAA GTTGGGAGGAATCCCGGTATTGGGGCAAACGTCGCAATTGCCTAAATTTATTAGTGAGTTCCGTGTTGAAGACGTTATTA TTGCCGTGCCTTCTGCACATAAGAAGTTCATTCGGAAAATTGTGGCCTGCTGCAAGTCTTCTGGTGTACATTTCAAAACT CTGCCAAGTATTCCGGATTTGATTGACGGCTCTGTCTCAATTTCACAAATCAGAAAAGTTGAGATTGACGACCTCCTTGG AAGAGATCCGGTGCAACTTGATCAACAGGCCATCAGCTCTTATCTGACTGGCAAGCGGGTTTTGGTGACTGGTGCTGCTG GTAGCATAGGTGCTGAGATCTGCCGACAAATATGTGCCTATAACCCGGCTAAACTTCTGATTTTAGATAGTGCTGAAACA CCCCTCTACCATATAGAAAAAGAGTTGGTGGCGCAATTCCCTGCTTTACGTATAATTCCGATTATTGCTGATGTGCGCAA TCGTGACCGTATCGCTTGCCTGTTTGACAGTTTTATACCTCAGGTTGTTTTTCATGCCGCTGCTTATAAGCATGTACCAA TGATGGAGTATAACCCGATGGAGGCTGTCTGTAATAATGTTGGTGGAACCATGCATCTTGCGGATGCTGCCCATGCCTGT AGAGCAGAACGTTTTGTTATGATTTCTACTGATAAAGCAGTCAATCCCACTAATGTAATGGGGGCCAGCAAGCGGGCTGC TGAGTTATATGTGCAGGCTTTGGCCCAAGGATCGCACACCTGCTTTACCACAGTCCGGTTCGGCAATGTGCTGGGTAGTA ACGGTAGTGTGATACCGCTTTTCAAAGAGCAGATTCTGAAAGGTGGGCCTGTCACAGTAACCGATCCCAGAGTTATCCGT TTCTTTATGACCATTCCTGAAGCGTGTCAGCTGGTACTGCAGGCTGGCTGTCTGGGGCAGGGGGGCGATATTTTTGTGCT GGATATGGGAGAACCAGTACGAATTCTTGACCTCGCTGAAGAGTTGATTCGTCTTTCCGGTCTGACTCCGTATGAAGATA TTGAGATAGTGTTTAGCGGTCTGCGGCCAGGTGAAAAAATGTTTGAAGAGTTGTTGGTTGATGGTGAAAATGTTTTGCCA ACAGCTCACGAAAAGATTTGCGTTGTTAGAGCTATCAATCTTAATTACGAAGAGATTTTGTGTATGGTTCAGAAACTACT CGTTGTTGCAAATAATTTTGATACCGGTGCTATTTTACAACAGTTAAAGCTTATGGTGCCAGAGTTCACGGCACAATACC ATTTTAAGGGCGAACCGCCGTTTCCGTTTCGACGTTTGCGTCCAGATGTCATGGAATCAAATGAATACACTATATAA Protein sequence : MTIPRSLLKFLLDLILIVVAYSFALLLDEDLVVSAVYLTRFLRSLPYVVVIQALVFVTSRLYSNIWRYASLQDVLEIFKA VTLAVIMTAFGLLFVRDTLVFYRTLLILDWGVLMALMLSSRFVLRFNRENCSLLPQCLKQQPKGRATLIVGAGDAANLLI KEIQKQHDTGFRIVGLVDDNPEKQGLKLGGIPVLGQTSQLPKFISEFRVEDVIIAVPSAHKKFIRKIVACCKSSGVHFKT LPSIPDLIDGSVSISQIRKVEIDDLLGRDPVQLDQQAISSYLTGKRVLVTGAAGSIGAEICRQICAYNPAKLLILDSAET PLYHIEKELVAQFPALRIIPIIADVRNRDRIACLFDSFIPQVVFHAAAYKHVPMMEYNPMEAVCNNVGGTMHLADAAHAC RAERFVMISTDKAVNPTNVMGASKRAAELYVQALAQGSHTCFTTVRFGNVLGSNGSVIPLFKEQILKGGPVTVTDPRVIR FFMTIPEACQLVLQAGCLGQGGDIFVLDMGEPVRILDLAEELIRLSGLTPYEDIEIVFSGLRPGEKMFEELLVDGENVLP TAHEKICVVRAINLNYEEILCMVQKLLVVANNFDTGAILQQLKLMVPEFTAQYHFKGEPPFPFRRLRPDVMESNEYTI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 7e-100 | 47 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 6e-103 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Glov_1513 | YP_001951749.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 2e-103 | 45 |
| Glov_1513 | YP_001951749.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 7e-83 | 42 |
