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Name : yscV (BMULJ_04778) Accession : YP_001949161.1 Strain : Genome accession: NC_010805 Putative virulence/resistance : Virulence Product : type III secretion protein SctV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1769943 - 1772132 bp Length : 2190 bp Strand : - Note : COG4789: Type III secretory pathway, component EscV, Ralstonia solanacearum; KEGG, K03230 DNA sequence : ATGGCAGAACCGAAGGCGCTTCCCCGCGACTGGCAGCGGATGTTTTCCGTCGGCCGCGGCGTGTCCGGACATCGCCGGAT CGGCGCGTCGCCGCGCGCCGATCTGTTTCTTGCCGCCTTCATCGTCGCCGTCGTCGCGCTGTTCATCCTGCCGCTGCCGC AGGCCGCGCTCGACGGGATGATCTCGCTGAATCTGGCCGCAAGCGTCGTACTGCTGACCGTGTCGACCTACGTGCCGTCG GCGGTCAGCTTCTCGTCGTTTCCCGCGCTGCTGCTGTTTACGACGCTGTTCCGGCTCGCGCTGAACATCGCGTCGTGCAA GCTGATCCTGCTGCACGCGAACGCCGGTCACGTCATCGATGCGTTCGGGCGGCTCGTGGTCGGCAACAACGTCGTCGTCG GCGGTGTCGTGTTTCTCGTGATCGCCGTCGTGCAGTTCATCGTGATCGCGAAAGGCTCGGAGCGCGTGGCCGAGGTCGGC GCGCGCTTTTCGCTCGACGCGATGCCGGGCAAGCAGATGAGCATCGACGCGGATCTGCGCGCCGGCATCATCAGCGCGGA CGAAGCGCGCGAGCGTCGCGAGAAGCTCGAGCAGGAATCGCAGATGCACGGTGCGATGGACGGCGCGATGAAGTTCGTGA AGGGCGACGCGATCGCCGGCCTCGTGATCGCGTTCATCAACATCGTCGCGGGCATCGCGGTCGGCACGCTGATGCACGGC ATGGACATCGGCACGGCGCTGCAGCGCTACGCGATCCTGACGGTCGGCGACGGCATGGCGTCGCAGATTCCGTCGCTGCT CGTGTCGATCGCGGCCGGCATCGTGACGACGCGCGTCGCGACGCGCGATGCGCGGCAGCGCCAGCTCGGCGAGCAGCTGG GCGAACAGCTCGGCGCGCATCCGCGTGCGCTGCTGATCGCGGCGCTCGTGCTGGCCGGCTTCCTCGTCGTGCCCGGTTTT CCGAAATGGTCGTTCGCGCTGATCGCCGTGGCGCTCGGCGCGTTCGCGCTGACGCAGCTCAAGCGCAAGACGACCGCACC GAGCTTCAACCTGATCCACGTGGCCGGGCGTGTCGGCGCGGCCGACGACGGGCAGCCGGCGAAGGTATCGCACGCGGCGG GCGTCACGTCGCTGATCGCGGTATCGCTGGCCGACGATCTGCGCAGCGCGCTGAACCTCGCGCAGCTGCAGGCCGCCCTG TCGAACGCGAAGGCGCGCGTCGACGCGGACATCGGCACGGTGTTCCCGCGCATCACGCTGAACGACGACGAGCGCGCGCC GGCCGGCACGTACCGCATCTATCTGCAGGACGTGCTCGCCGCGCACGGTGCGCTGAAGCCCGGCTGGCTGCTGTGGGACG GCGTCGCGCCGCTGCCCGAGCGCGCGGAGCGTCAGCCGGCCGAAGCGTTCGGCCCGTTCGCGACGGCACTGTGGGTCAAG CCGGACGGCGCGCCGCCGGACGGCAAGTGGTTGACGAGCGAGGCGGCGCTCGCCGCGCACGTCGAGCAGATCGTGCGCGA GCACGCGGACGAACTGCTCGGCATCCAGGAGACGCAGGCGCTCGTGCATCTGGTGCGGCGCGATCACCCGGAGCTCGTCG GCGAACTGACGCGGCTCGTGCCGCTGCAGCGCGTGACCGAGGTGCTGCGCCGGCTGCTCGCCGAGCAGGTGCCGATCCGC AATCTGCGCGTGATCTTCGAAAGCCTGATCACGTGGGCGCCGAACGAGCCCGACGACGTGATCGCGCTCGTCGAGCTCGT GCGCGTCGACCTGCGCCGGATGATCACCGATCGCCACGCGGGCGCCGCGCGCCAGCTGCGCGTCGTGCTGTTCGAGCAGA ACCTGCAGGAGCGCATCGAGAACGCGGTGATGCGCACGAAGCAGGGCAACTTCCTCGCGCTGTCGAGCGCCGTGAAGCAG GACATCGGCGAGCAGGTGCGCGCCATCGTGCAATCGGCGCACGCGAGCGGCGCGCACGGCGCCGCGCGGCTCGCCGTGAT GGTCGCGCTCGGCGCGCGCCGCTACGTGAAGACGATCCTGCAGCCGATGCTGCCCGATCTTCCGGTGCTGTCGTATCAGG AGATCGAGGAGGACGTGCAGCTGCATACGGTCGGCTGGGTCAAGAACCCGCCGGACGACGGCACGGTCGGCGCCGGCGCC GACGTGCGTACACCGGGCGTCGCGCAATGA Protein sequence : MAEPKALPRDWQRMFSVGRGVSGHRRIGASPRADLFLAAFIVAVVALFILPLPQAALDGMISLNLAASVVLLTVSTYVPS AVSFSSFPALLLFTTLFRLALNIASCKLILLHANAGHVIDAFGRLVVGNNVVVGGVVFLVIAVVQFIVIAKGSERVAEVG ARFSLDAMPGKQMSIDADLRAGIISADEARERREKLEQESQMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHG MDIGTALQRYAILTVGDGMASQIPSLLVSIAAGIVTTRVATRDARQRQLGEQLGEQLGAHPRALLIAALVLAGFLVVPGF PKWSFALIAVALGAFALTQLKRKTTAPSFNLIHVAGRVGAADDGQPAKVSHAAGVTSLIAVSLADDLRSALNLAQLQAAL SNAKARVDADIGTVFPRITLNDDERAPAGTYRIYLQDVLAAHGALKPGWLLWDGVAPLPERAERQPAEAFGPFATALWVK PDGAPPDGKWLTSEAALAAHVEQIVREHADELLGIQETQALVHLVRRDHPELVGELTRLVPLQRVTEVLRRLLAEQVPIR NLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGAARQLRVVLFEQNLQERIENAVMRTKQGNFLALSSAVKQ DIGEQVRAIVQSAHASGAHGAARLAVMVALGARRYVKTILQPMLPDLPVLSYQEIEEDVQLHTVGWVKNPPDDGTVGAGA DVRTPGVAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 8e-74 | 42 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-74 | 42 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-74 | 42 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 5e-90 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscV | YP_001949161.1 | type III secretion protein SctV | VFG0064 | Protein | 2e-88 | 42 |
| yscV | YP_001949161.1 | type III secretion protein SctV | VFG0198 | Protein | 2e-86 | 42 |
| yscV | YP_001949161.1 | type III secretion protein SctV | VFG0384 | Protein | 6e-95 | 41 |
