|
Name : smpB (Clim_0529) Accession : YP_001942600.1 Strain : Chlorobium limicola DSM 245 Genome accession: NC_010803 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 597027 - 597500 bp Length : 474 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : TTGGCAAAAAAACAGGAAAAACCGCAGTATATTCGTTCGATCCAGAACAGGAAAGCCCGTTTCGAGTTTCACATTCTCGA TTCGGTCGTTGCCGGTATAGAACTGCTGGGAAGCGAGGTAAAATCAGTGCGGCTCGGCAAAGCGAGCCTGAATGAAAGCT TTGCGATCATCCATCACGGCGAGGTCTGGCTTGAAAACATGCAGATCACCCCGTACGAACACAACACCCTCGATAAACTC GAAGCGAAAAGAAGCCGCAGGCTTCTCCTGCATCGGGATGAAATTCGTAAACTCCAGACAAAAATCAGAGAAAAGGGGTT GACGCTTATTCCCCTCAAAGCCTTTTTCACCGACCGGGGGATACTGAAAATAGAGATCGCGCTTGCCAAAGGGAAAAAAC TGTACGACAAGCGGGAAACCATCAAGGCAAGAGACACCGAGCGTCAGATGCAGCAGATAAAAAAATCCTATTAA Protein sequence : MAKKQEKPQYIRSIQNRKARFEFHILDSVVAGIELLGSEVKSVRLGKASLNESFAIIHHGEVWLENMQITPYEHNTLDKL EAKRSRRLLLHRDEIRKLQTKIREKGLTLIPLKAFFTDRGILKIEIALAKGKKLYDKRETIKARDTERQMQQIKKSY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 1e-28 | 49 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-24 | 43 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 2e-19 | 43 |
