Gene Information

Name : Clim_0386 (Clim_0386)
Accession : YP_001942458.1
Strain : Chlorobium limicola DSM 245
Genome accession: NC_010803
Putative virulence/resistance : Resistance
Product : ATP-dependent DNA helicase RecG
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1200
EC number : -
Position : 423547 - 425667 bp
Length : 2121 bp
Strand : +
Note : catalyzes branch migration in Holliday junction intermediates

DNA sequence :
ATGGCCGTATTATCGTCATTGACCACGCTGAAAGGGGTCGGGCCGAAACGGGCGACCATTCTCGAACAGGCAGGCATTGC
AACTCCTGAGAATCTGTTCGATTATTTTCCCCGCCGCTATCTCGATCGCCGGACGATCAGGCGTATCGGGGAACTCCGTG
CCGGTGAAGCGGTGACGGTGGTGGGAACGGTTCTGCAGGCCCGTCTTGAAGGAACCCAGCCGGGCCGGATGCGCTTCAAG
GTCGTTCTTGCCGACGGTACCGGATCGATCGAACTGACCTGGTTCAAGGGAGTCCGGTATTTCGCTTCGAGCGTTGCGCC
GGGTGATGCGCTTGCGGTGAACGGAAAGGTTGGAGTTTTCGGACGTCAGATGCAGATGCAGCACCCGGATTTCGAGCATC
TCAGCAGAACCTCGGTGCATGAAAACCAGGAGGGGGGTTCTGATTACGAACTGTTTCATACCGGCAGGATCATACCGCTT
TATCCTGTCAGTGCGGCCATGAAACAGGGTGGTTTGCATTCTCGCCAGCTGCGCACCATCATTGCCGGAGCTTTCGAGCG
GTTTCCTCCGGGACGGGATGAGAATCTCACTCCAGGAATCATCAGGGAGTACGGGCTGCTTCCGCTTGCCGAGGCCTATC
GCGAAATGCATTTTCCTTCGTCGCCTGAAAAGCTCGAGGAGGCGAGAACCCGTATGAAATGGACGGAGCTGTTTTACACG
CAGCTGCTTTTTGCGCTGAAGCACGCACATCTTGAAAGGAATCATTCCGCGCCCTGTTTTACCCATTCAGGTGAGGTTAC
CCGGCGGTTTTATGCCGGATTGCCGTTTGCATTGACGGATGCTCAAAAACAGGTGATCAGGGAGATCTATCGCGATCTCA
AACGTGCCCGGCCCATGAACCGCTTGCTGCAGGGGGATGTGGGATCGGGCAAAACGATGGTGGCGATGTTTTCCATGGCT
CTTGCCGCCGATAACGGACTGCAGTCGGCGTTCATGGCGCCGACGGAAATTCTTGCGGTACAGCACTTTCTTTCGCTGAA
ACGCTCTCTGCATCCGCTCGGCATCGATGTGGCGCTGCTTGCGGGACGTCAGAGAAAAAAAGAGCGGGAAGCCGCTCTCT
CGGGTCTTGCAGACGGTTCGCTCACGGTAGCAGTGGGTACGCATGCCATGATCGAAAAGGGGGTTTCTTTTTCCAGGCTT
GGTCTGGTAATTATCGATGAACAGCACCGCTTCGGCGTTCTGCAGCGTAAAGCCCTGCAGGATAAGGCTGCAAGTCCGCA
TGTGCTGCTCATGACGGCCACGCCGATTCCGAGAACCCTCACCATGGCCGGATTCGGAGATCTCGATGTCTCCGTTATCG
ATGCGATGCCTGCGGGGAGAGTGCCGATAAGAACGCAGCTTGTTTCGGAACATTCGAAAAACCGGGTTTATGAGCTGCTT
CGTCGTGAGGTTGCATCGGGAAGGCAGGCTTATATTGTTTATCCGCTTGTGGAGGAGTCAGAAAAGATCGATCTTCGGGC
AGCGGTCGAGAGCTATGGGGAGCTTGCCGCTACGACGCTTGGTGATCTGCGACTTGGCCTCATTCACGGTCAGATGACTC
CGGAGGAGAAAGAGTCGGCCATGGATCGGTTCAGAGCCGGGGAAATTGACGTGCTTGTCGGCACAACGGTCATCGAGGTC
GGAGTCGATGTGCCCAATGCCACGGTAATGGTGATCGAGCATGCCGAACGGTTCGGGCTTGCGCAGCTTCATCAGTTGAG
GGGTCGGGTCGGGCGTGGCCGGCACGCTTCGAGCTGTTTTCTGATTCATGCCCCCTTTTCCGGCGATGCGGGAGAGCGCC
TTCGGGCTATGGAGTCGACTCCCGACGGGTTCAAGATTTCGGAAATCGATGCGGCTATTAGAGGGGCCGGCAACGTGCTC
GGCAAAGAGCAGGCCGGTATGGTGAGCGGTTTGAAGCTTGCCGATCCGCTTCTTGACGCTTCGCTCATGCAGACGGCCCG
CAAGGCAGCGTTTGCGCTTGCCGCAGAGGATGGCGAACTGAGAGCGCGGGAACATGCTATGATCAGAAGCTGTTATTTGC
GCTATTATCATGACCGTTCGATACTTGCCGATATCGGGTGA

Protein sequence :
MAVLSSLTTLKGVGPKRATILEQAGIATPENLFDYFPRRYLDRRTIRRIGELRAGEAVTVVGTVLQARLEGTQPGRMRFK
VVLADGTGSIELTWFKGVRYFASSVAPGDALAVNGKVGVFGRQMQMQHPDFEHLSRTSVHENQEGGSDYELFHTGRIIPL
YPVSAAMKQGGLHSRQLRTIIAGAFERFPPGRDENLTPGIIREYGLLPLAEAYREMHFPSSPEKLEEARTRMKWTELFYT
QLLFALKHAHLERNHSAPCFTHSGEVTRRFYAGLPFALTDAQKQVIREIYRDLKRARPMNRLLQGDVGSGKTMVAMFSMA
LAADNGLQSAFMAPTEILAVQHFLSLKRSLHPLGIDVALLAGRQRKKEREAALSGLADGSLTVAVGTHAMIEKGVSFSRL
GLVIIDEQHRFGVLQRKALQDKAASPHVLLMTATPIPRTLTMAGFGDLDVSVIDAMPAGRVPIRTQLVSEHSKNRVYELL
RREVASGRQAYIVYPLVEESEKIDLRAAVESYGELAATTLGDLRLGLIHGQMTPEEKESAMDRFRAGEIDVLVGTTVIEV
GVDVPNATVMVIEHAERFGLAQLHQLRGRVGRGRHASSCFLIHAPFSGDAGERLRAMESTPDGFKISEIDAAIRGAGNVL
GKEQAGMVSGLKLADPLLDASLMQTARKAAFALAAEDGELRAREHAMIRSCYLRYYHDRSILADIG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
recG CAJ77039.1 ATP-dependent DNA helicase Not tested AbaR1 Protein 1e-98 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clim_0386 YP_001942458.1 ATP-dependent DNA helicase RecG BAC0356 Protein 3e-103 42