Gene Information

Name : Clim_2018 (Clim_2018)
Accession : YP_001944029.1
Strain : Chlorobium limicola DSM 245
Genome accession: NC_010803
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2237522 - 2238238 bp
Length : 717 bp
Strand : -
Note : PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_0473 ABC transporter

DNA sequence : 
ATGGCCACAGAAATTCTCAGGCTTGAAGGCATCCGCAGGGAGCTTGAGTTGTCGCGCGATGTGCGGCAGACCATTATTCC
CAACCTTTCTCTGGAAATCATGGCCGGGGAGTTCGTTGCCATCACCGGGCCGTCCGGATCGGGAAAGTCCACGCTGCTTT
ACATCATGGGAGGTCTCGACAAACCGACATACGGCAAGGTATGGCTGGACGGCGAGGAGATAACCGAAAAGGATGAAACG
GCCATGACCCGTATCCGTAACGAGAAAATAGGGTTTATCTATCAGTTTCATTTTCTGCTGCCGGAGTTTAACGCCGTTGA
AAATGTCAGTATGCCGATGATGATCAACGGACGGTTCAGCAGGAAAGAGATCAGGGAGAGGGCGATGAAGTTGCTCGATA
CCGTCGGTCTCGATAACAAATATACCAACAAGCCGAGTCAGCTTTCCGGCGGGCAGCAGCAGCGGGTTGCCATTGCAAGG
GCGCTTGCCAACGAACCGAAGGTTCTGCTCGGCGATGAGCCGACCGGAAATCTCGATTCGAAATCCGCTCGTAACGTCTA
TGAGCTTTTCGATCGTCTCAACCGGGAGCTGAACCAGACGGTGATAGTGGTGACGCACGACGAGGAGTTCGCCAACAGGG
CCGGACGAAGGATCCATCTTGTTGATGGCATGATCGAGAGCGATAGCGTGCCGAAGAGCGCGGCACTTTCCGTATAA

Protein sequence : 
MATEILRLEGIRRELELSRDVRQTIIPNLSLEIMAGEFVAITGPSGSGKSTLLYIMGGLDKPTYGKVWLDGEEITEKDET
AMTRIRNEKIGFIYQFHFLLPEFNAVENVSMPMMINGRFSRKEIRERAMKLLDTVGLDNKYTNKPSQLSGGQQQRVAIAR
ALANEPKVLLGDEPTGNLDSKSARNVYELFDRLNRELNQTVIVVTHDEEFANRAGRRIHLVDGMIESDSVPKSAALSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-32 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-32 41
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-21 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clim_2018 YP_001944029.1 ABC transporter NC_012469.1.7686878. Protein 9e-39 48
Clim_2018 YP_001944029.1 ABC transporter NC_008702.1.4606598. Protein 2e-35 47
Clim_2018 YP_001944029.1 ABC transporter CP001581.1.gene798.p Protein 9e-32 46
Clim_2018 YP_001944029.1 ABC transporter CP001581.1.gene598.p Protein 1e-33 43