Gene Information

Name : Clim_1533 (Clim_1533)
Accession : YP_001943562.1
Strain : Chlorobium limicola DSM 245
Genome accession: NC_010803
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1654245 - 1654931 bp
Length : 687 bp
Strand : +
Note : PFAM: ABC transporter; SMART: AAA ATPase; KEGG: plt:Plut_1335 ATPase

DNA sequence : 
ATGGAACCCGTCATCATCAGCATGGTATCGCTCTGCCGGTACTACGAAATGGGCGACCAGATCGTCAAGGCGCTCGACAA
TATCAACATGGAGTTCAGGCACAACGATTATGCTGCCATCATGGGGCCTTCCGGAAGCGGAAAATCGACGCTCATGAATA
TGATCGGCTGTCTCGACACCCCGACGTCCGGAATCTATGAGCTCAACGGCACCAACGTCGCTGAAATGGATGACGATGAA
CTGGCAAGGGTGAGAAACCGGGAAATCGGTTTTGTTTTTCAGACCTTCAATCTGCTGCCCCGCATGAACTGTCTGAAAAA
TGTCGAGTTGCCTCTGATTTACGCCGGAGTGCCTCCCGAAGAACGCCATGAGCGTGCCGAACAGGCTCTGCTCAGCGTCG
GACTCGGCGACCGGATACAGCACAAGCCATCCGAATTATCGGGTGGACAGATACAGCGCGTTGCCATAGCAAGGGCACTG
GTCAACAAGCCCTCCATCATTCTTGCCGATGAACCGACCGGCAACCTCGACACTGCAACAAGCCACGATATCATGGAGAT
GTTCGGAAAACTTTCCAACGAAGGCAATACCATCATCCTCATTACCCATGAAGAGGACATCGCCCGCTTTACCCACAGGA
TTATCCGCCTGCGGGACGGCAGAATCGAAAGCGATGAACGTCAATGA

Protein sequence : 
MEPVIISMVSLCRYYEMGDQIVKALDNINMEFRHNDYAAIMGPSGSGKSTLMNMIGCLDTPTSGIYELNGTNVAEMDDDE
LARVRNREIGFVFQTFNLLPRMNCLKNVELPLIYAGVPPEERHERAEQALLSVGLGDRIQHKPSELSGGQIQRVAIARAL
VNKPSIILADEPTGNLDTATSHDIMEMFGKLSNEGNTIILITHEEDIARFTHRIIRLRDGRIESDERQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 1e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clim_1533 YP_001943562.1 ABC transporter NC_012469.1.7686878. Protein 2e-58 59
Clim_1533 YP_001943562.1 ABC transporter NC_008702.1.4606598. Protein 3e-45 46
Clim_1533 YP_001943562.1 ABC transporter CP001581.1.gene798.p Protein 2e-36 44
Clim_1533 YP_001943562.1 ABC transporter CP001581.1.gene598.p Protein 4e-43 43