Gene Information

Name : Clim_1421 (Clim_1421)
Accession : YP_001943460.1
Strain : Chlorobium limicola DSM 245
Genome accession: NC_010803
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1528932 - 1529666 bp
Length : 735 bp
Strand : -
Note : PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_1509 ABC transporter

DNA sequence : 
ATGCAGGATAATTCTTCAGGAAGCGTATCACATCAGGCAGTGCTGAGCATACAGGACCTTTCGAAAACCTATATCATGGG
TGAGGTGAAGGTCGAAGCGCTCAAGCATCTCTCTATCGAGTTTTTTGCAGGTGAGCTTGTCGTGCTGCTTGGGGCGTCAG
GCAGCGGTAAATCGACCCTCCTTAATATTATCGGAGGGCTCGATCTGCCTTCTGAAGGTAAGCTGTTTTTTCAGGGCAGG
GAAATTACTGCAGCAACAGAAGCCGAGCTGACGGCTTACCGTCGCCGTTCGATAGGGTTTGTGTTTCAGTTCTATAACCT
GATTTCCAGTTTGTCGGCTCTTGAGAACGTGCAGCTCGTTACCGAAATCGCCGATAATCCCATGCCGGCGGACGAGGCTC
TCAGGCTGGTAGGGCTCTCCAATCGTTTGAACCATTTTCCCGCTCAGCTTTCGGGGGGCGAGCAGCAGCGCGTCGCCATA
GCGAGGGCTGTCGCCAAAAAGCCTGAACTGCTTTTATGCGATGAGCCAACCGGCGCTCTCGACTATCAGACAGGAAAGCT
GGTACTTGAGGTTATCGAGAAAGTAAATCGTGAATTGGGCACGACAACAATCGTCATCACGCATAATGCTTCGATTGCCG
GTATGGCCGACAGGGTTGTCAGGCTTGGAAGCGGCGAGGTGACGGAAGACCGCAGGAACCCTGAACGGCTCACTCCTGCC
GAACTTGTCTGGTAG

Protein sequence : 
MQDNSSGSVSHQAVLSIQDLSKTYIMGEVKVEALKHLSIEFFAGELVVLLGASGSGKSTLLNIIGGLDLPSEGKLFFQGR
EITAATEAELTAYRRRSIGFVFQFYNLISSLSALENVQLVTEIADNPMPADEALRLVGLSNRLNHFPAQLSGGEQQRVAI
ARAVAKKPELLLCDEPTGALDYQTGKLVLEVIEKVNRELGTTTIVITHNASIAGMADRVVRLGSGEVTEDRRNPERLTPA
ELVW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-28 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-28 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-28 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clim_1421 YP_001943460.1 ABC transporter NC_012469.1.7685735. Protein 4e-49 53
Clim_1421 YP_001943460.1 ABC transporter CP001581.1.gene798.p Protein 9e-34 45
Clim_1421 YP_001943460.1 ABC transporter NC_008702.1.4606598. Protein 1e-26 42