Gene Information

Name : Clim_1294 (Clim_1294)
Accession : YP_001943340.1
Strain : Chlorobium limicola DSM 245
Genome accession: NC_010803
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1395439 - 1396359 bp
Length : 921 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region

DNA sequence :
ATGAAAGCGCGTAAAAACTGGATCAGCGACAAAGAACAGTTGTCGGTATCTACCCAATGTGAACTTGCCGGAGTAACCCG
GTCAGGGTACTACGGGCAAAGTAAAAGCCTCATGCCAAATACTGAAGATCTGGAACTGATGAAGCTTATCGACGAGGAGT
ACACCCGACATCCGTTTTATGGAAGCCGACGGATGAAGCAGGTCCTGCTCACCCAAGGGCGCAAGGTCAACCGGAAACGA
GTACAGCGCCTGATGCGTAACCTGGGGCTTGCGGGTATGGCTCCAGGGCCCAATACCAGCAAACCGCATCCGCAGCACAA
GATCTATCCATACCTGTTGCGAGGTCTTGCCATTACCAGACCGAACCATGTCTGGTCGACCGATGTGACCTATTGCCGGT
TACCCGGCGGCTTTATGTATCTGACGGCTGTCATCGACTGGTATTCCCGCAAGGTGCTGGCATGGAGGCTTTCGAATTCC
CTGGATAGCAGCTTCTGTGTTGACTGCCTTGAGGAGGCGATCCGCAAGTACGGAACGCCGGAAATCTTCAACACCGATCA
GGGCGTTCAGTACACCAGTGATGCGTTCACCAGCGTGCTCAAGAGCCATGAGATCCGCATCAGCATGGATGGCCGTGGCC
GGGCCCTGGACAATGTTTTCGTCGAGCGGTTATGGCGGAATGTCAAGCAGGAAGACCTGTACCTGAAAGGCTATGAAACA
GCGGTAGAAATGATGCGGGGATTCGCCGAATATTTCCGTTTTTACAATATCGAGCGGCCTCATCAGTCGCTGGGGTACAA
AACCCCGGACGAGGTGTATGAAAGCGCCATAGGAGGCGGAGCACGCATCGTCGACAAGTTCTCTAAGAGTGTCTCCGAAG
GGTCGTCGGAGGCTACAGGGCCGCAACAGGAAGCGGCATAA

Protein sequence :
MKARKNWISDKEQLSVSTQCELAGVTRSGYYGQSKSLMPNTEDLELMKLIDEEYTRHPFYGSRRMKQVLLTQGRKVNRKR
VQRLMRNLGLAGMAPGPNTSKPHPQHKIYPYLLRGLAITRPNHVWSTDVTYCRLPGGFMYLTAVIDWYSRKVLAWRLSNS
LDSSFCVDCLEEAIRKYGTPEIFNTDQGVQYTSDAFTSVLKSHEIRISMDGRGRALDNVFVERLWRNVKQEDLYLKGYET
AVEMMRGFAEYFRFYNIERPHQSLGYKTPDEVYESAIGGGARIVDKFSKSVSEGSSEATGPQQEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ABK1_0264 YP_005512836.1 insB Not tested AbaR4d Protein 3e-59 52
unnamed ACF06170.1 putative transposase Not tested Tn5036-like Protein 5e-64 50