Gene Information

Name : Clim_1291 (Clim_1291)
Accession : YP_001943337.1
Strain : Chlorobium limicola DSM 245
Genome accession: NC_010803
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1391472 - 1392140 bp
Length : 669 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cph:Cpha266_1205 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGGATTCTTGTTATCGAAGACGAACCCGGAATATCCGGATTTCTCAAGGAAGGACTTGAAGAGGAGTATTTTGCCGT
CGATCTGGCTTTCGACGGCAAAACCGGGCTTGACATGGCACTCCTGAACGAATATGATCTCATGATCGTTGACTGGATGA
TTCCCGGAATCAGCGGTATAGAGGTATGCCGACAGGTACGCAAAGCCGGGAGTTCCGTTCCGATCCTCTTTTTGACCGCA
AAAGATACCCTTGAGGACATCGTGTTCGGTCTCGATGCCGGGGCAAACGACTATATCAGAAAACCTTTTGCATTCGAGGA
GCTGCTGGCCCGCATACGGGTGCAGCTTCGACGAAACAATCCCGAAAGCGACACCATCACGGCAGGATGTGTGACCGTAA
ACCCGGTTACCCACCAGGTATTCTGCAGGAATACAGAAATCGCACTGACCCCCAAGGAATTTTCCCTGCTTGAATTTCTG
GCACGCAACAAGGATAAAGTCTGTACAAGAAGCAGGATCATCGAACATGTCTGGGACATGCATTTCGACTCCGATACGTC
GGTCATCGATGTTTACATCAATTTTCTTCGAAAAAAACTCGACATTGTCGGATGCGGAAACATCATTCAAACAATTCGGG
GCGTCGGCTACATCATCCGTGAATCCTGA

Protein sequence : 
MRILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEYDLMIVDWMIPGISGIEVCRQVRKAGSSVPILFLTA
KDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNNPESDTITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFL
ARNKDKVCTRSRIIEHVWDMHFDSDTSVIDVYINFLRKKLDIVGCGNIIQTIRGVGYIIRES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-36 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-35 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator BAC0638 Protein 5e-37 48
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 3e-45 47
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 3e-45 47
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 3e-45 47
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 3e-45 47
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 3e-45 47
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 3e-45 47
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 3e-45 47
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 3e-45 47
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-40 46
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-41 46
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator BAC0125 Protein 1e-39 45
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator BAC0347 Protein 3e-35 44
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator BAC0308 Protein 3e-38 44
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-36 44
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 3e-40 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator VFG1390 Protein 2e-46 45
Clim_1291 YP_001943337.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-36 44