Gene Information

Name : Clim_1279 (Clim_1279)
Accession : YP_001943325.1
Strain : Chlorobium limicola DSM 245
Genome accession: NC_010803
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1379586 - 1380293 bp
Length : 708 bp
Strand : -
Note : PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ppd:Ppro_3713 ABC transporter

DNA sequence : 
ATGAGCATTGTTGTTGTCGAAGGACTTCGCAAAGTATTCGGCCAGGGAGAGCTTGCCGTCGAAGCGCTCAAGGAGGCCTC
ATTCAGTGTCGAGCCGGGGGAGCTGATGGCTCTGCTCGGACCATCGGGTTCAGGCAAAAGCACCCTGCTGCTCTGCATCA
GCCTCATCCAGGAACCCACATCAGGCCGTATTACCATGAACGGCCAGAAGATATACGACAATGGCTGGACCGGGGTTGAC
GTGCGGCGGTTCCGTCGGGAAAACATCGGTTTCATCTTTCAGGCACATAACCTCATCCCCTTTCTCAACGCGCGGGACAA
CATTGCAATCGCAATGGAGATCAACGGCGTTCACCCGAAAGCCGCCCGCAAGCGTGCACTTGAACTGCTGGATTACCTCG
ATCTTTTGAGCTGGGCAACATCTTTGCCTGCCACTCTCTCTGGAGGGGAACAGCAGCGGGTGGCCATCGGGCGGGCCCTG
GCCAATGCCCCCTCACTCATTTTTGCCGACGAACCGACCGCTTCGCTCGATACCGTGAGAGGGACAAAGGTAATGGAACT
GCTCAAGCGCATTGCCCGCGAACAAAAGACAGCCGTCATCGCCGTTACACACGACATCCGCATGATCGAAGGTTTCGATA
CCATCTACCACATTGTCGATGGGCGGCTTGTCATTGATGAGGCCGTCGCCAAAAGCACTACGGCGTAA

Protein sequence : 
MSIVVVEGLRKVFGQGELAVEALKEASFSVEPGELMALLGPSGSGKSTLLLCISLIQEPTSGRITMNGQKIYDNGWTGVD
VRRFRRENIGFIFQAHNLIPFLNARDNIAIAMEINGVHPKAARKRALELLDYLDLLSWATSLPATLSGGEQQRVAIGRAL
ANAPSLIFADEPTASLDTVRGTKVMELLKRIAREQKTAVIAVTHDIRMIEGFDTIYHIVDGRLVIDEAVAKSTTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-29 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-29 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clim_1279 YP_001943325.1 ABC transporter CP001581.1.gene798.p Protein 7e-33 45
Clim_1279 YP_001943325.1 ABC transporter NC_012469.1.7686878. Protein 3e-30 43