Gene Information

Name : ompR (Minf_2199)
Accession : YP_001940850.1
Strain : Methylacidiphilum infernorum V4
Genome accession: NC_010794
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator, OmpR family (REC-wHTH domains)
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2040044 - 2040715 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
TTGATTGTGGAGGACGATCAAAAAGTCCGAAAGCACCTCAAAGGGGCATTACAGGCCGAAGGCTACACGGTTGAAGAATG
CGAGGATGGCGAAGAAGCCCAGTGGCTTCTTGAAAACTACAATTATGACTTGGCCATTCTTGACTTGATGTTGCCAGCCA
AAGATGGAATAAGCATCGTCAGGCAGCTTCGTCGCCAGGGTCTTTCCATTCCCGTTCTTTTTTTATCAGGCAGGTCCGCC
GTTTCCGATCGCGTCCATGGGCTAGATGCAGGCGGGGATGATTATCTTACCAAGCCCTTTTCGACCATCGAACTCTTAGC
CCGTGTCCGAGCCCTTCTGCGCAGACGATCTCCCATTTCTCCGACCAAGCTGAAATTTGAAGACTTGGAAATGGATCTCG
TCCGAAGGACGGTCAGCCGCGCCGGTCAACCCATAGAGCTCACCAACAGGGAATTCGAGTTGCTCAGGCTCCTGCTTGAA
TCCGCTCCCAATCCTGTAAACAAGGCGATCATTACCGAGAAAATCTGGGACCGGTGCTTTGACTCTGAAACCGCCCTGGT
CAACGTCCACATCAACCACCTGCGTCAAAAAATCCATTTACCCGGCTTACCTCCTCTCCTTCATACGGTCAGGGGGGTAG
GATTTATCCTGAAACACCCAACCGACAAATGA

Protein sequence : 
MIVEDDQKVRKHLKGALQAEGYTVEECEDGEEAQWLLENYNYDLAILDLMLPAKDGISIVRQLRRQGLSIPVLFLSGRSA
VSDRVHGLDAGGDDYLTKPFSTIELLARVRALLRRRSPISPTKLKFEDLEMDLVRRTVSRAGQPIELTNREFELLRLLLE
SAPNPVNKAIITEKIWDRCFDSETALVNVHINHLRQKIHLPGLPPLLHTVRGVGFILKHPTDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-26 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ompR YP_001940850.1 DNA-binding response regulator, OmpR family (REC-wHTH domains) BAC0197 Protein 3e-31 45
ompR YP_001940850.1 DNA-binding response regulator, OmpR family (REC-wHTH domains) BAC0083 Protein 3e-30 44
ompR YP_001940850.1 DNA-binding response regulator, OmpR family (REC-wHTH domains) BAC0638 Protein 4e-29 44
ompR YP_001940850.1 DNA-binding response regulator, OmpR family (REC-wHTH domains) BAC0308 Protein 1e-28 44
ompR YP_001940850.1 DNA-binding response regulator, OmpR family (REC-wHTH domains) BAC0111 Protein 1e-28 42
ompR YP_001940850.1 DNA-binding response regulator, OmpR family (REC-wHTH domains) BAC0347 Protein 2e-25 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ompR YP_001940850.1 DNA-binding response regulator, OmpR family (REC-wHTH domains) VFG0596 Protein 6e-27 43
ompR YP_001940850.1 DNA-binding response regulator, OmpR family (REC-wHTH domains) VFG1390 Protein 2e-28 42
ompR YP_001940850.1 DNA-binding response regulator, OmpR family (REC-wHTH domains) VFG1389 Protein 2e-20 41