Gene Information

Name : SYO3AOP1_1640 (SYO3AOP1_1640)
Accession : YP_001931792.1
Strain : Sulfurihydrogenibium sp. YO3AOP1
Genome accession: NC_010730
Putative virulence/resistance : Virulence
Product : flagellar protein export ATPase FliI
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 1696879 - 1698192 bp
Length : 1314 bp
Strand : -
Note : KEGG: nis:NIS_0626 flagellar-specific ATP synthase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: ATPase AAA

DNA sequence :
ATGAAATTAAAAGAGAGATTAAAAAACTATCCGAAATATAAAGCAATTGGGAAAGTAAAAAAAGTTATAGGCAATACTAT
AGAAGCAATTATTCCAAAAGTTAGCATTGGAGACAAGTGCATAATAGATAAATCTATAGAATCAGAAGTAATTGGATTTA
AAGACGGTACAGTATTGTTAATGAGTTATGAAAATTTGGATGGCATAAAAATTAATAGCCCTGTAGAGGTTTGCTATACA
AAGCCGTCTGTCCTTGTAGGCTTGGATTTGCTTGGAACTATTGTAGACCCTTTTGGAAGACCTTTAAATAAAGAAAAAAT
TAACTATTCCAATAGCTATTATCTTAAACTTGAAACTATAAATCCTTTAGAAAGAGAAAGAGTTACAGAAGTCTTAGATT
TAGGAGTTAGAGCAGTAAACGCTTTATTTACCATCGGAAAAGGGCAAAGAATGGGAATTCTCTCTGGTGCAGGTGTTGGA
AAAAGCACCCTCTTAGGAATGATTTCAAGGTTTACAGAAAGCGATGTAAACGTAATAGCTTTGATAGGTGAAAGAGGCAG
AGAAGTCAGAGAGTTTATTGAAGATAGCTTAAAAGAAGAAGGGTTAAAAAAATCTGTGGTTGTAGTAGCTACTTCCGATA
TGCCGCCTTTAGCAAAAATAAGAGCAGTTATGACTTCTCTTGCTATAGCGAGATACTTTTCAAATATTGGTAAGAATGTA
CTTTATCTTTTAGACTCCTTAACAAGAGTAGCTATGGCGCAAAGAGAAATAGGACTATCTGCAGGAGAACCGCCAACAAC
AAAAGGATACACTCCATCAGTGTTTACACTTCTACCAAGAATTATAGAGCAAGCTGGAAATTTTAAAAATAAAGGAAGTA
TTACAGGAATATACACAGTTTTGGTTGAAGGTGATGAAATTCAAAATGACCCAATAGCAGATGCTGCTATTTCATTTTTA
GATGGTCATATTGTATTATCAAGACAAATTGCAAATAAAAGAATTTATCCCGCTATTGATATTCTAAAAAGTATAAGTAG
ATTAATGCCCCAGCTTGTTAATGACGAAATAATGTTATACCAATCAAAAATTATAAGCTTAGAGGCAAAGTATAGAGAAA
TGGAAGACATGATAAACTTGGGACTTTATAAAGAAGGGTCTTCCAAAGAAGTAGATTTAGCAATTAAAATGCATCCGGTT
ATAGAAGAATTTATTAAACAAGATATAAACGAAAGGATTGATTTTAAAAAAAGTATTGATGATTTAAAAAATGTGTTAAA
CTATTTTAAAAACATAGGGGGTGAATTAAGATGA

Protein sequence :
MKLKERLKNYPKYKAIGKVKKVIGNTIEAIIPKVSIGDKCIIDKSIESEVIGFKDGTVLLMSYENLDGIKINSPVEVCYT
KPSVLVGLDLLGTIVDPFGRPLNKEKINYSNSYYLKLETINPLERERVTEVLDLGVRAVNALFTIGKGQRMGILSGAGVG
KSTLLGMISRFTESDVNVIALIGERGREVREFIEDSLKEEGLKKSVVVVATSDMPPLAKIRAVMTSLAIARYFSNIGKNV
LYLLDSLTRVAMAQREIGLSAGEPPTTKGYTPSVFTLLPRIIEQAGNFKNKGSITGIYTVLVEGDEIQNDPIADAAISFL
DGHIVLSRQIANKRIYPAIDILKSISRLMPQLVNDEIMLYQSKIISLEAKYREMEDMINLGLYKEGSSKEVDLAIKMHPV
IEEFIKQDINERIDFKKSIDDLKNVLNYFKNIGGELR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-78 44
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-73 44
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-73 44
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-72 44
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 6e-72 44
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-74 44
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-74 44
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-74 44
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-68 43
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 1e-68 43
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-68 43
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-68 43
escN AAC31513.1 L0034 Virulence LEE Protein 1e-68 43
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-72 43
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-73 43
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-70 42
escN YP_003223475.1 translocator EscN Virulence LEE Protein 7e-69 42
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 5e-69 42
escN AAC38383.1 EscN Virulence LEE Protein 1e-68 42
escN AAK26715.1 EscN Virulence LEE Protein 9e-69 42
escN AAL57542.1 EscN Virulence LEE Protein 9e-69 42
escN CAI43874.1 EscN protein Virulence LEE Protein 5e-69 42
escN CAC81862.1 EscN protein Virulence LEE II Protein 4e-69 42
unnamed AAL06369.1 EscN Virulence LEE Protein 4e-68 42
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-69 41
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-69 41
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-69 41
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-69 41
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-70 41
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-68 41
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-68 41
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 6e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG1254 Protein 1e-82 47
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG0390 Protein 4e-82 46
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG2144 Protein 7e-79 44
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG2499 Protein 2e-79 44
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG0192 Protein 6e-84 43
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG0048 Protein 8e-80 43
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG0812 Protein 8e-69 43
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG0730 Protein 6e-69 42
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG2331 Protein 1e-73 41
SYO3AOP1_1640 YP_001931792.1 flagellar protein export ATPase FliI VFG0515 Protein 8e-70 41