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Name : lysS (SYO3AOP1_1601) Accession : YP_001931753.1 Strain : Sulfurihydrogenibium sp. YO3AOP1 Genome accession: NC_010730 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1653690 - 1655423 bp Length : 1734 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGCAGAAGGGATTTTAGAAAGCAGATTAGAAAAAATTAGAAAATTAACAGAAGAAGGAAAAAATCCTTACCCACATAA ATTTAGCATTACAACAGACCTAAAATCTGTTAGAGAAGGACTTGAATTTGAGCCCGAAGATAAAGAGTACATCATAAAAG GAAAAATAAAAAGGGTATCTAAAAAGGAAAACGATTATTTTATAAGATTTGAAGATTTAAACGGACATTACGAAATTCAA GTAATCTTTCCACAAAAAGAAAAACTATCTCCAAATACAGTAGCATCATTCAAAGGAAAATTAAAAAGAATTGACGGAAA GCTTACACTTTTAGCTGAAGAAGTTTTATTTGAAGAAGCAGGAGAAGATGTATCAACAATAAAAAATAGATATGACAAAG ACCCGGAGAAAAAGCAAGTTGCAGTAGCCGGTAGGCTAATAGCACTCAGAGACCAAGGAAAAGCTGCTTTTGGACATATC CAAGATTCGGACGGAAAACTGCAGGTATACTTTAACGCTGACATTCTTGGAGAAGAAAATTATAAAAAAGCAATGGACTT AATAGATATTGGAGATATTATTGGCGTAGAAGGTCATCTATTTAGAACTATGACAGGTGAGCTTACAGTAGAAGTTCATA ACTATGAAATATTAGCAAAATCTTTAAGACCACTTCCGGAAAAATGGCACGGACTAAAAGATACTGAGTACAGATACAGA TACAGATACTTAGATTTAATAGCAAATCAAAGAACGAGAGAAATCTTTAAAATAAGGTCTAAGGCAATAAAAAGTTTGAG AGAGTTTTTAGAAAGTAAAGGATTTATAGAAGTAGAAACGCCAATACTTCAACCTGTAGCATCAGGAGCTATGGCAAAAC CTTTTATTACATATCACAACGCACTTGATATGAATCTGTATCTAAGAATTGCACCAGAGCTTTATTTGAAAATGCTTGTA GTTGGTGGATTTAATAGAGTTTTTGAGATAGGAAGAAATTTCAGAAATGAAGGGATAGATACAACGCACAACCCAGAATT TACGATGGTTGAGTTTTACGCAGCATACTTAGACTATAACGACTTGATGGCATTGACAGAAGAGCTGTTTAGAAAAATAC TTCTTGATACAGTTGGAACGTTAAAAATAACATGGGAAGGCCAAGAGCTTGATTTTGAAAAACCATTTAGAAAAGTAGCA TTTTTTGATGCATTAAAACAAAAAACAGGAAAAGATAAAGAATTTTTCTTAGATTTTGAAAAAGCAAGAAATTTTGCAAA AGAGGTAGGAATACCAAAAGCAGATACATTAACCCATGTGAAAATTCTTGATAAACTTTTTGAACATTTTGTTGAAGAAG ACCTTATCCAGCCTACATTTGTAATAGATTTTCCAAAGATACTATCACCACTTGCAAAAACACACAGAAACGACCCAGAT TTAGTAGAAAGATTTGAGCTTATCATAAATAAAAAAGAGCTTGCAAACGCTTATACAGAGCTAAATGACCCTATGGACCA AAGAGAAAGATTCATCCAACAAATCAGAGAAAAAGAGATGGGCGATGAGGAAGCAATGGACATTGATGAAACATTCTTAA CAGCTTTAGAGTATGGTTTACCACCTACAGCAGGTGAAGGAATTGGAATAGACAGACTTGTAATGATGCTTACAGACAAT TACTCAATCAGAGAAGTAATCCTATTTCCAACTCTTAGACCAGAAGGACAGTAA Protein sequence : MAEGILESRLEKIRKLTEEGKNPYPHKFSITTDLKSVREGLEFEPEDKEYIIKGKIKRVSKKENDYFIRFEDLNGHYEIQ VIFPQKEKLSPNTVASFKGKLKRIDGKLTLLAEEVLFEEAGEDVSTIKNRYDKDPEKKQVAVAGRLIALRDQGKAAFGHI QDSDGKLQVYFNADILGEENYKKAMDLIDIGDIIGVEGHLFRTMTGELTVEVHNYEILAKSLRPLPEKWHGLKDTEYRYR YRYLDLIANQRTREIFKIRSKAIKSLREFLESKGFIEVETPILQPVASGAMAKPFITYHNALDMNLYLRIAPELYLKMLV VGGFNRVFEIGRNFRNEGIDTTHNPEFTMVEFYAAYLDYNDLMALTEELFRKILLDTVGTLKITWEGQELDFEKPFRKVA FFDALKQKTGKDKEFFLDFEKARNFAKEVGIPKADTLTHVKILDKLFEHFVEEDLIQPTFVIDFPKILSPLAKTHRNDPD LVERFELIINKKELANAYTELNDPMDQRERFIQQIREKEMGDEEAMDIDETFLTALEYGLPPTAGEGIGIDRLVMMLTDN YSIREVILFPTLRPEGQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-102 | 49 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-83 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001931753.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-102 | 49 |
