Gene Information

Name : SYO3AOP1_1575 (SYO3AOP1_1575)
Accession : YP_001931727.1
Strain : Sulfurihydrogenibium sp. YO3AOP1
Genome accession: NC_010730
Putative virulence/resistance : Virulence
Product : ATPase AAA-2 domain-containing protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1627802 - 1630246 bp
Length : 2445 bp
Strand : -
Note : PFAM: UvrB/UvrC protein; ATPase AAA central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: ATPase AAA; KEGG: aae:aq_1296 ATP-dependent Clp protease

DNA sequence :
ATGTTTGAAAAATTTACAGAAAAGGCAAGAAAAGTAATATTAACAGCAAGGGAGCATGCGTTAAAATACAAAAATAACTA
CTTAGGAAGTGAACATCTTCTCTTAGGGTTGATTGATGAAGATGATATTGTAGTTTTAGTATTATCTAAATTTGGTCTTT
CCCCGGAAAAGGTAAAGAAAACTTTACTTTCTCAAATTCCAAGAGGTACACATACAGGAGAGATACTATTTTCTCCGGAC
GCTAAAAGAATATTAGAGTATGCAGTAGAAGAAGCAAGAATTTTACACCATCCATTTGTTGGTCCAGAACATTTGTTAAT
TGGGGTTGTTAGAGAAAAGTCCGGGCTTGGTGGAAGGGTGTTAAGAGGCTTTGGAATTGATGAGTATTCGGTAAGAAGAG
AAATATTGTCAGTTTTAGGTGAAATACCACCACAAGAGCAGGTAAAACAAATACCTACACCAAACTTAGATAGATACGGA
AGAGACCTTACTGCACTTGCAAAAGAAGGAAAGCTTGACCCAGTAATTGGTAGAGATAGAGAAATAGAGAGAGTTATTCA
AATACTTTCAAGAAGAAGAAAAAACAATCCTGTTTTGATAGGTGAACCTGGGGTTGGAAAAACCGCAATCGTAGAAGGAT
TAGCACAAAGGATAGTAAGCAAAAAAGCACCAGAAATTCTCTGGAACAAAAGAATAATAGCTTTAGATTTAGCATCCTTA
GTAGCAGGCACAAAATACAGAGGACAGTTTGAAGAAAGACTAAAAACAATTTTAAAAGAGTTAGAAAAAACACCTAACAT
TATACTATTTATAGATGAGCTTCACACAATGGTTGGAGCAGGTTCAGCTGAAGGTTCTCTTGATGCTTCCAACATGTTAA
AACCAGCGTTGGCAAGAGGTGAGGTTCAAGTAATAGGTGCTACAACTTTAGATGAATACAGAAAGTATATAGAAAAAGAC
GGAGCATTAGAAAGAAGATTCCAGCCGGTCATTGTAGACCCACCAACTCCAGAAAATACAATATTGATTTTAGAAGGTTT
AAAGCATAAGTTTGAAGAATTTCATAACGTTGAATACACAAAAGAAGCAATAGAAAAAGCTGTTGAGTATTCTGTTAAAT
ACATACCTGACAGATACTTGCCAGACAAAGCTATAGACTTATTGGATGAAGCAGGAGCGTTAGTAAGATTAAGAGAGCTT
GAATTGCCACAAGACCTTAAACAATTGGAAGAAGAAATAAAAAAGATAGAAGACGAAAAGACAAAAGCTATAAAAGAAGA
AGATTTTGATAAAGCATCAAAGCTAAGAGATGAAGAGGTTAAATTAAGAGCTAAATTTGAGACACTTAAACTTAAATGGA
AAGAAGAGCAAAAGGAAACCAAACCTAAGGTTACTGTTAGAGATATCGCAGAAGTTATAGCAAGATGGACAGGTATTCCA
GTTGCAAGACTAACAGAAACTGATAAAGAAAAACTTCTGCATATAGAAGAAGAATTACATAAGAGAGTTGTTGGACAAGA
TGAAGCAATTACGGCTATAGCAAAAGCTATAAGAAGAAACAGCGTTGGCTTAAAAGGTAGACATAGACCTATCGGAGTAT
TCTTATTCTTAGGGCCAACAGGTGTTGGAAAAACAGAAACAGCAAAAGCTTTAGCTGAATATTTGTTTGGTAGAGAAGAT
GCTTTAATAAGATTTGATATGAGTGAATATATGGAAAAACATACAGTATCAAGACTTATCGGTGCACCTCCGGGATACGT
AGGTTATGAAGAAGGAGGTCAGCTTACTGAAGCGGTAAGAAGAAAACCATACTCTGTCATTCTTTTTGATGAGATAGAAA
AAGCTCATCCGGATGTATTTAATATATTCTTACAGATATTTGACGATGGAAGGCTAACAGACTCTCTTGGCAGGGTGGTT
GATTTTAGCAACACTATCATTATTATGACATCTAACCTTGGTGCAAGAATGATTTTGGAAAGTGGTAAAATGGGATTTGA
AACAAAATCTTCAATGCTAGACTATAAAGACTTAAAGAAAAACGTTTTAGAACAAGTTAAGAAAGCATTTAACCCAGAGT
TTATAAATAGACTTGACGAAATCATAGTATTTAAACCATTAGACAAATCTGTAATTCAAGGTATAATAGATAAGCAAATT
AAAGAGATAAACGAAAGGTTAAAAGAATGGGAAATAGAAGTGAAACTCTCTCCAGAGTTTGTAGAGTACTTAATAGAGAA
GGAATTCAAACCAGAGTATGGAGCAAGAAGTATCAAAAGAGCTTTACAATCACAAGTGGAAGACTTATTAGCAGAGGAGA
TTTTAGCAGGAAAACTACACCCTGGCTCAGTAGTAGAAGTTGGTATGAAAGATGGCAAAGTAGTTTTAAATCCTGTAAAA
CAGAAGAAAAAATCCAAAAAGAAAAAAGAACTTCAGACAGCATAA

Protein sequence :
MFEKFTEKARKVILTAREHALKYKNNYLGSEHLLLGLIDEDDIVVLVLSKFGLSPEKVKKTLLSQIPRGTHTGEILFSPD
AKRILEYAVEEARILHHPFVGPEHLLIGVVREKSGLGGRVLRGFGIDEYSVRREILSVLGEIPPQEQVKQIPTPNLDRYG
RDLTALAKEGKLDPVIGRDREIERVIQILSRRRKNNPVLIGEPGVGKTAIVEGLAQRIVSKKAPEILWNKRIIALDLASL
VAGTKYRGQFEERLKTILKELEKTPNIILFIDELHTMVGAGSAEGSLDASNMLKPALARGEVQVIGATTLDEYRKYIEKD
GALERRFQPVIVDPPTPENTILILEGLKHKFEEFHNVEYTKEAIEKAVEYSVKYIPDRYLPDKAIDLLDEAGALVRLREL
ELPQDLKQLEEEIKKIEDEKTKAIKEEDFDKASKLRDEEVKLRAKFETLKLKWKEEQKETKPKVTVRDIAEVIARWTGIP
VARLTETDKEKLLHIEEELHKRVVGQDEAITAIAKAIRRNSVGLKGRHRPIGVFLFLGPTGVGKTETAKALAEYLFGRED
ALIRFDMSEYMEKHTVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILFDEIEKAHPDVFNIFLQIFDDGRLTDSLGRVV
DFSNTIIIMTSNLGARMILESGKMGFETKSSMLDYKDLKKNVLEQVKKAFNPEFINRLDEIIVFKPLDKSVIQGIIDKQI
KEINERLKEWEIEVKLSPEFVEYLIEKEFKPEYGARSIKRALQSQVEDLLAEEILAGKLHPGSVVEVGMKDGKVVLNPVK
QKKKSKKKKELQTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SYO3AOP1_1575 YP_001931727.1 ATPase AAA-2 domain-containing protein VFG0079 Protein 0.0 54
SYO3AOP1_1575 YP_001931727.1 ATPase AAA-2 domain-containing protein VFG0080 Protein 5e-151 53