|
Name : PGN_1646 (PGN_1646) Accession : YP_001929762.1 Strain : Porphyromonas gingivalis ATCC 33277 Genome accession: NC_010729 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 1843456 - 1844727 bp Length : 1272 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTGACACTCAAGCAAATCATAGAAAATAAGGAAGAAGTGATCCGTCGCTTGGCGGTGAAGCACTTCGATGCAGCTGC TATTCTCGACGAAGTCATCTCTCTCGACAGACAGCGACGCGAAACTCAACAGAGTCTGGATGCTCGTTTGGCGGAGCAAA ACGCCATTGCCAAGGAGATCGGAGCTTTGATGAAAGCCGGCAAGAAAGGCGAGGCAGAGGCCATCCGTACGAAAGTAGCC GATATGAAAGCCGAGAGCCACCATCTGGAAGAGCGGAAAGCTGATCTGGAGAATGCTATACGCCAACAGCTTCTGCTTAT CCCGAATCTGCCGCATGAGTCTGTCCCTGCAGGCAAGACCGCAGAGGAGAATGTCTGTGTGAAGACAGGCGGCACAGTGC CGGAGCTTGGAACGCACAAGCTCCCACATTGGGATCTGGCCAAGAAATACGATCTGATCGACTTCGAACTCGGCGTCAAG ATAACCGGAGCAGGCTTCCCTGTCTATAAGGGCAAAGGAGCACGCCTGCAGCGAGCTTTGGTCAACTTCTTCTTGGACGA AGCCCGCAACGCCGGCTTCACGGAGATAGAGCCGCCCTATGTGGTCAATGAAGATTCCGGCTATGGTACGGGACAGCTCC CCGACAAGGAAGGGCAGATGTACCATGTCACGGCGGACAACCTGTATCTGATCCCCACGGCAGAGGTGCCGGTGACCAAT ATCTTCCGCGATGTCATTCTCTCCGAGGACGAATTGCCCATTCTCCTGACCGCTTACTCGGCTTGCTTCCGACGCGAAGC CGGTTCGTATGGCAAGGATGTTCGCGGCCTGAACCGCCTCCATCAGTTCAACAAGGTGGAGATCGTCTGCATCGACAAGC CCGAACACTCCTACGAACAGCTCGATCAGATGGTCGGCTATGTCCAAGGCCTTGTAGATAAGTTGGGACTTCCGTGGCGT ATCCTTCGCCTCTGCGGCGGAGATATCAGCTTCACTTCGGCATTGACTTACGACTTCGAAGTCTATTCGGCTGCCCAAGA GCGGTGGTTGGAGGTTAGCTCGGTGTCCAATTTCGAGAGCTTCCAAGCCAATCGTCTGAAGTGCCGTTATCGCAATGCGG ATAAGAAAGTGGAGCTTTGCCACACGCTCAACGGTAGTGCCTTGGCCTTGCCGCGTATCGTGGCTGCTCTGTTGGAAAAC AATCAGACAGCCGATGGCATCCGCATCCCCGACTGTCTGGTACCTTATACAGGCTTCTCGATGATCGATTGA Protein sequence : MLTLKQIIENKEEVIRRLAVKHFDAAAILDEVISLDRQRRETQQSLDARLAEQNAIAKEIGALMKAGKKGEAEAIRTKVA DMKAESHHLEERKADLENAIRQQLLLIPNLPHESVPAGKTAEENVCVKTGGTVPELGTHKLPHWDLAKKYDLIDFELGVK ITGAGFPVYKGKGARLQRALVNFFLDEARNAGFTEIEPPYVVNEDSGYGTGQLPDKEGQMYHVTADNLYLIPTAEVPVTN IFRDVILSEDELPILLTAYSACFRREAGSYGKDVRGLNRLHQFNKVEIVCIDKPEHSYEQLDQMVGYVQGLVDKLGLPWR ILRLCGGDISFTSALTYDFEVYSAAQERWLEVSSVSNFESFQANRLKCRYRNADKKVELCHTLNGSALALPRIVAALLEN NQTADGIRIPDCLVPYTGFSMID |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-73 | 45 |
